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Aliases for LINC01882 Gene

Subcategory (RNA class) for LINC01882 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01882 Gene

  • Long Intergenic Non-Protein Coding RNA 1882 2 3
  • AP005482.1 5

External Ids for LINC01882 Gene

Previous GeneCards Identifiers for LINC01882 Gene

  • GC18M014122
  • GC18M014418
  • GC18M014716
  • GC18M014980

Summaries for LINC01882 Gene

GeneCards Summary for LINC01882 Gene

LINC01882 (Long Intergenic Non-Protein Coding RNA 1882) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01882 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01882 Gene

Genomics for LINC01882 Gene

GeneHancer (GH) Regulatory Elements for LINC01882 Gene

Promoters and enhancers for LINC01882 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J012776 Enhancer 0.9 FANTOM5 Ensembl dbSUPER 671.5 -1.0 -1027 2 NFATC3 NFYB NFYC ZBTB33 LINC01882 PTPN2 GC18M015664
GH18J012775 Enhancer 0.6 ENCODE dbSUPER 668.4 +0.6 552 1.1 NFYC ZBTB33 LINC01882 PTPN2 ENSG00000267199 ENSG00000201466
GH18J012878 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8.9 -106.6 -106564 8.2 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 PTPN2 GC18P012884 PSMG2 CEP192 CEP76 LINC01882 ENSG00000267199 ENSG00000267480 GC18M015649 GC18M015277
GH18J012989 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.1 -215.0 -215018 3.7 YBX1 FEZF1 DMAP1 YY1 SLC30A9 E2F8 ZNF143 ZNF548 SP3 NFYC CEP192 ENSG00000266969 PSMG2 PTPN2 PRELID3A CEP76 ENSG00000267249 ENSG00000267199 LINC01882 RNMT
GH18J012836 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 8.9 -63.7 -63655 6.1 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 IRF4 YY1 GLIS2 ZNF143 ATF7 PTPN2 PSMG2 CEP192 LINC01882 GC18M015277 GC18M015649 GC18P012884
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01882 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01882 Gene

Genomic Locations for LINC01882 Gene
chr18:12,739,486-12,776,137
(GRCh38/hg38)
Size:
36,652 bases
Orientation:
Minus strand
chr18:12,774,650-12,775,922
(GRCh37/hg19)
Size:
1,273 bases
Orientation:
Minus strand

Genomic View for LINC01882 Gene

Genes around LINC01882 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01882 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01882 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01882 Gene

Proteins for LINC01882 Gene

Post-translational modifications for LINC01882 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01882 Gene

Domains & Families for LINC01882 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01882 Gene

Function for LINC01882 Gene

Phenotypes From GWAS Catalog for LINC01882 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01882 Gene

Localization for LINC01882 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01882 Gene

Pathways & Interactions for LINC01882 Gene

SuperPathways for LINC01882 Gene

No Data Available

Interacting Proteins for LINC01882 Gene

Gene Ontology (GO) - Biological Process for LINC01882 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01882 Gene

Drugs & Compounds for LINC01882 Gene

No Compound Related Data Available

Transcripts for LINC01882 Gene

mRNA/cDNA for LINC01882 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01882 Gene

No ASD Table

Relevant External Links for LINC01882 Gene

GeneLoc Exon Structure for
LINC01882
ECgene alternative splicing isoforms for
LINC01882

Expression for LINC01882 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01882 Gene

Orthologs for LINC01882 Gene

Evolution for LINC01882 Gene

ENSEMBL:
Gene Tree for LINC01882 (if available)
TreeFam:
Gene Tree for LINC01882 (if available)

No data available for Orthologs for LINC01882 Gene

Paralogs for LINC01882 Gene

No data available for Paralogs for LINC01882 Gene

Variants for LINC01882 Gene

Sequence variations from dbSNP and Humsavar for LINC01882 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000053509 -- 12,739,141(-) G/A downstream_transcript_variant
rs1000304029 -- 12,745,439(-) T/G intron_variant
rs1000583159 -- 12,744,278(-) A/T intron_variant
rs1000826113 -- 12,748,641(-) C/G intron_variant
rs1000926326 -- 12,749,514(-) A/T upstream_transcript_variant

Variation tolerance for LINC01882 Gene

Gene Damage Index Score: 0.16; 3.53% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for LINC01882 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01882

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01882 Gene

Disorders for LINC01882 Gene

Additional Disease Information for LINC01882

No disorders were found for LINC01882 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01882 Gene

Publications for LINC01882 Gene

  1. cDNA microarray analysis of altered gene expression in Ara-C-treated leukemia cells. (PMID: 12951057) Takagaki K … Yano J (Biochemical and biophysical research communications 2003) 3 58

Products for LINC01882 Gene

Sources for LINC01882 Gene

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