Aliases for LINC01881 Gene

Data sources for LINC01881 Gene:

Subcategory (RNA class) for LINC01881 Gene

lncRNA

Aliases for LINC01881 Gene

External Ids for LINC01881 Gene

Summaries for LINC01881 Gene

GeneCards Summary for LINC01881 Gene

LINC01881 (Long Intergenic Non-Protein Coding RNA 1881) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01881 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01881 Gene

Genomics for LINC01881 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01881 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01881 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01881 Gene

Latest Assembly
chr2:242,088,632-242,162,157
(GRCh38/hg38)
Size:
73,526 bases
Orientation:
Plus strand

Previous Assembly
chr2:243,175,503-243,176,659
(GRCh37/hg19 by Entrez Gene)
Size:
1,157 bases
Orientation:
Minus strand

chr2:243,030,784-243,102,304
(GRCh37/hg19 by Ensembl)
Size:
71,521 bases
Orientation:
Plus strand

Genomic View for LINC01881 Gene

Genes around LINC01881 on UCSC Golden Path with GeneCards custom track
LINC01881 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01881 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01881 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01881 Gene

Proteins for LINC01881 Gene

Post-translational modifications for LINC01881 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01881 Gene

Domains & Families for LINC01881 Gene

Gene Families for LINC01881 Gene

genes like me logo Genes that share domains with LINC01881: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01881 Gene

Function for LINC01881 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01881 Gene

Localization for LINC01881 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01881 Gene

Pathways & Interactions for LINC01881 Gene

PathCards logo

SuperPathways for LINC01881 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01881 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01881 Gene

Drugs & Compounds for LINC01881 Gene

No Compound Related Data Available

Transcripts for LINC01881 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01881 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E4BF0_9606 lncRNA 1370 3

RefSeq: NR_130702,

LNCipedia: lnc-RTP5-8:2,

NONCODE: NONHSAT183953.1,

URS00007E4950_9606 lncRNA 1494 2

RefSeq: NR_130699,

LNCipedia: lnc-RTP5-8:3,

URS00007E3D01_9606 lncRNA 1427 2

RefSeq: NR_130701,

LNCipedia: lnc-RTP5-8:1,

URS00007E3DF9_9606 lncRNA 1272 2

RefSeq: NR_130700,

LNCipedia: lnc-RTP5-8:4,

URS00008C324A_9606 lncRNA 557 3

LncBook: HSALNT0050069,

LNCipedia: lnc-RTP5-8:13,

NONCODE: NONHSAT078033.2,

LINC01881 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01881 Gene

8 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01881 Gene

No ASD Table

Relevant External Links for LINC01881 Gene

GeneLoc Exon Structure for
LINC01881

Expression for LINC01881 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01881

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01881 Gene

Orthologs for LINC01881 Gene

Evolution for LINC01881 Gene

ENSEMBL:
Gene Tree for LINC01881 (if available)
TreeFam:
Gene Tree for LINC01881 (if available)

No data available for Orthologs for LINC01881 Gene

Paralogs for LINC01881 Gene

No data available for Paralogs for LINC01881 Gene

Variants for LINC01881 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01881 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01881 Gene

Variant ID Type Subtype PubMed ID
dgv2382e59 CNV duplication 20981092
dgv4200n100 CNV loss 25217958
dgv4203n100 CNV loss 25217958
dgv4206n100 CNV loss 25217958
dgv4209n100 CNV gain 25217958
dgv4210n100 CNV gain+loss 25217958
dgv4213n100 CNV loss 25217958
dgv4214n100 CNV gain 25217958
dgv4215n100 CNV gain 25217958
dgv4216n100 CNV gain 25217958
dgv4217n100 CNV gain 25217958
dgv498n27 CNV loss 19166990
dgv499n27 CNV gain 19166990
dgv7399n54 CNV loss 21841781
dgv7407n54 CNV loss 21841781
dgv7410n54 CNV gain+loss 21841781
dgv7412n54 CNV loss 21841781
dgv768e214 CNV gain 21293372
dgv769e214 CNV gain 21293372
dgv90e203 CNV gain+loss 21179565
esv21498 CNV gain+loss 19812545
esv2421480 CNV deletion 20811451
esv26327 CNV gain 19812545
esv2658929 CNV deletion 23128226
esv29953 CNV loss 18421352
esv33229 CNV gain+loss 17666407
esv3561320 CNV deletion 23714750
esv3594857 CNV loss 21293372
esv3594864 CNV loss 21293372
esv3594867 CNV loss 21293372
esv3594868 CNV loss 21293372
esv3893581 CNV loss 25118596
esv994430 CNV insertion 20482838
nsv1002941 CNV gain 25217958
nsv1007202 CNV loss 25217958
nsv1007762 CNV loss 25217958
nsv1009698 CNV loss 25217958
nsv1009791 CNV loss 25217958
nsv1013958 CNV loss 25217958
nsv10235 CNV gain+loss 18304495
nsv1071669 CNV deletion 25765185
nsv1125716 CNV tandem duplication 24896259
nsv1129656 CNV tandem duplication 24896259
nsv1141378 CNV duplication 24896259
nsv1141379 CNV duplication 24896259
nsv1146505 CNV duplication 26484159
nsv1152056 CNV deletion 26484159
nsv428411 CNV loss 18775914
nsv438385 CNV loss 16468122
nsv441806 CNV gain+loss 18776908
nsv469780 CNV loss 16826518
nsv470533 CNV loss 18288195
nsv471619 CNV loss 15918152
nsv585161 CNV loss 21841781
nsv961576 CNV duplication 23825009
nsv961577 CNV duplication 23825009
nsv961578 CNV duplication 23825009
nsv961579 CNV duplication 23825009
nsv961946 CNV duplication 23825009
nsv962025 CNV duplication 23825009
nsv962026 CNV duplication 23825009
nsv962027 CNV duplication 23825009
nsv963865 CNV duplication 23825009
nsv963868 CNV duplication 23825009
nsv979193 CNV duplication 23825009
nsv979282 CNV duplication 23825009
nsv979283 CNV duplication 23825009

Additional Variant Information for LINC01881 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01881

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01881 Gene

Disorders for LINC01881 Gene

Additional Disease Information for LINC01881

No disorders were found for LINC01881 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01881 Gene

Publications for LINC01881 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  2. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  5. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3

Products for LINC01881 Gene

Sources for LINC01881 Gene