LINC01880 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1880

GC02M242049
GIFtS:
8
See more...

Aliases for LINC01880 Gene

Data sources for LINC01880 Gene:

Subcategory (RNA class) for LINC01880 Gene

lncRNA

Aliases for LINC01880 Gene

External Ids for LINC01880 Gene

Summaries for LINC01880 Gene

GeneCards Summary for LINC01880 Gene

LINC01880 (Long Intergenic Non-Protein Coding RNA 1880) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01880 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01880 Gene

Genomics for LINC01880 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01880 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J242085 Promoter 0.3 EPDnew 250.7 +0.5 469 0.1 LINC01880 HSALNG0023747 FAM240C
GH02J242084 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas 8.2 -2.8 -2763 5.5 ZBTB10 SP1 MXD4 CEBPA MNT SMAD5 BHLHE40 ZEB1 ELF1 ZIC2 ENSG00000261186 LINC01881 FARP2 ENSG00000235351 KCTD5P1 MTERF4 LINC01880 NEU4 ATG4B FAM240C
GH02J242097 Enhancer 1 Ensembl ENCODE 8.6 -13.9 -13927 2.8 MNT BHLHE40 ZNF395 REST NBN ZEB2 RBM22 ZNF316 TAL1 FOSL1 ENSG00000261186 LINC01880 ING5 LINC01881 piR-36559-010 FAM240C
GH02J242068 Enhancer 0.9 Ensembl ENCODE 7.3 +14.2 14236 3.1 ZIC2 CEBPB FOXA2 SAP130 EP300 RXRA CTBP1 RARA ZFP91 SOX5 ENSG00000261186 LINC01880 HSALNG0023747 piR-32861-041 FAM240C LINC01237
GH02J242075 Enhancer 0.8 Ensembl ENCODE 6.7 +9.1 9073 2 ZIC2 CEBPB MAX EP300 ZNF341 RXRA TBP USF2 RAD51 CEBPG HSALNG0023747 LINC01880 piR-32861-041 FAM240C LINC01237
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01880 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01880 Gene

Latest Assembly
chr2:242,046,295-242,084,674
(GRCh38/hg38)
Size:
38,380 bases
Orientation:
Minus strand

Previous Assembly
chr2:242,989,835-243,026,289
(GRCh37/hg19 by Entrez Gene)
Size:
36,455 bases
Orientation:
Minus strand

chr2:242,989,846-243,026,289
(GRCh37/hg19 by Ensembl)
Size:
36,444 bases
Orientation:
Minus strand

Genomic View for LINC01880 Gene

Genes around LINC01880 on UCSC Golden Path with GeneCards custom track
LINC01880 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01880 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01880 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01880 Gene

Proteins for LINC01880 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LINC01880 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01880 Gene

Domains & Families for LINC01880 Gene

Gene Families for LINC01880 Gene

HGNC:
genes like me logo Genes that share domains with LINC01880: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01880 Gene

Function for LINC01880 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01880 Gene

Localization for LINC01880 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01880 Gene

Pathways & Interactions for LINC01880 Gene

PathCards logo

SuperPathways for LINC01880 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01880 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01880 Gene

Drugs & Compounds for LINC01880 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC01880 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01880 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000599EBA_9606 lncRNA 565 4

Ensembl: ENST00000446593 (view in UCSC) ,

LncBook: HSALNT0050056,

LNCipedia: LINC01880:20,

NONCODE: NONHSAT078020.2,

URS0000EEC202_9606 lncRNA 1262 1

Ensembl: ENST00000661866 (view in UCSC) ,

URS0000EF5A30_9606 lncRNA 1096 1

Ensembl: ENST00000662783 (view in UCSC) ,

URS00008BA0C2_9606 lncRNA 551 3

LncBook: HSALNT0050063,

LNCipedia: LINC01880:14,

NONCODE: NONHSAT078029.2,

URS00008B562D_9606 lncRNA 392 3

LncBook: HSALNT0050062,

LNCipedia: LINC01880:13,

NONCODE: NONHSAT078028.2,

LINC01880 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01880 Gene

No ASD Table

Relevant External Links for LINC01880 Gene

GeneLoc Exon Structure for
LINC01880

No data available for mRNA/cDNA for LINC01880 Gene

Expression for LINC01880 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01880 Gene

Orthologs for LINC01880 Gene

Evolution for LINC01880 Gene

ENSEMBL:
Gene Tree for LINC01880 (if available)
TreeFam:
Gene Tree for LINC01880 (if available)

No data available for Orthologs for LINC01880 Gene

Paralogs for LINC01880 Gene

No data available for Paralogs for LINC01880 Gene

Variants for LINC01880 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01880 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01880 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01880

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01880 Gene

Disorders for LINC01880 Gene

Additional Disease Information for LINC01880

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01880 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01880 Gene

Publications for LINC01880 Gene

No publications were found for LINC01880 Gene.

No data available for Mastermind for LINC01880 Gene

Products for LINC01880 Gene

Sources for LINC01880 Gene