Aliases for LINC01879 Gene

Data sources for LINC01879 Gene:

Subcategory (RNA class) for LINC01879 Gene

lncRNA

Aliases for LINC01879 Gene

External Ids for LINC01879 Gene

Summaries for LINC01879 Gene

GeneCards Summary for LINC01879 Gene

LINC01879 (Long Intergenic Non-Protein Coding RNA 1879) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01879 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01879 Gene

Genomics for LINC01879 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01879 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J076686 Promoter/Enhancer 1.1 Ensembl ENCODE 250.7 +1.2 1227 1.8 ZNF217 CTCF ZIC2 MBD2 CUX1 SMC3 RAD21 CTBP1 JUND GATA3 HSALNG0122583 LINC01879 LOC105372212 HSALNG0122585 ZNF236 ZNF516
GH18J076689 Promoter 0.6 EPDnew 250.7 +4.0 3955 0.1 CTCF MAFG RAD21 BACH1 EMSY LINC01879 LOC105372212 HSALNG0122585 ZNF236 ZNF516
GH18J076679 Enhancer 0.6 Ensembl ENCODE 0.4 -6.1 -6057 1.6 CTCF ZIC2 RAD21 ZNF335 LINC01879 piR-52294-063 ZNF236 ZNF516
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01879 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01879 Gene

Latest Assembly
chr18:76,686,058-76,693,636
(GRCh38/hg38)
Size:
7,579 bases
Orientation:
Plus strand

Previous Assembly
chr18:74,401,986-74,405,592
(GRCh37/hg19 by Entrez Gene)
Size:
3,607 bases
Orientation:
Plus strand

Genomic View for LINC01879 Gene

Genes around LINC01879 on UCSC Golden Path with GeneCards custom track
LINC01879 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01879 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01879 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01879 Gene

Proteins for LINC01879 Gene

Post-translational modifications for LINC01879 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01879 Gene

Domains & Families for LINC01879 Gene

Gene Families for LINC01879 Gene

genes like me logo Genes that share domains with LINC01879: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01879 Gene

Function for LINC01879 Gene

Phenotypes From GWAS Catalog for LINC01879 Gene

Phenotypes for LINC01879 Gene

genes like me logo Genes that share phenotypes with LINC01879: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01879 Gene

Localization for LINC01879 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01879 Gene

Pathways & Interactions for LINC01879 Gene

PathCards logo

SuperPathways for LINC01879 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01879 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01879 Gene

Drugs & Compounds for LINC01879 Gene

No Compound Related Data Available

Transcripts for LINC01879 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01879 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B6B1_9606 lncRNA 2340 4

RefSeq: NR_122073,

Ensembl: ENST00000611889 (view in UCSC) ,

LNCipedia: LINC01879:5,

NONCODE: NONHSAT059950.2,

URS0000A897EE_9606 lncRNA 1455 2

Ensembl: ENST00000616078 (view in UCSC) ,

LNCipedia: LINC01879:4,

URS0000EF3AEA_9606 lncRNA 760 1

Ensembl: ENST00000656854 (view in UCSC) ,

URS0001BF3D2B_9606 lncRNA 2338 1

LncBook: HSALNT0253418,

URS0001BCBB46_9606 lncRNA 1455 1

LncBook: HSALNT0253419,

LINC01879 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01879 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01879 Gene

No ASD Table

Relevant External Links for LINC01879 Gene

GeneLoc Exon Structure for
LINC01879

Expression for LINC01879 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01879

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01879 Gene

Orthologs for LINC01879 Gene

Evolution for LINC01879 Gene

ENSEMBL:
Gene Tree for LINC01879 (if available)
TreeFam:
Gene Tree for LINC01879 (if available)

No data available for Orthologs for LINC01879 Gene

Paralogs for LINC01879 Gene

No data available for Paralogs for LINC01879 Gene

Variants for LINC01879 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01879 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01879 Gene

Variant ID Type Subtype PubMed ID
dgv3405n100 CNV gain 25217958
dgv6077n54 CNV gain 21841781
dgv643e214 CNV gain 21293372
esv2717388 CNV deletion 23290073
esv3643182 CNV loss 21293372
esv3643183 CNV loss 21293372
nsv1063632 CNV gain 25217958
nsv833697 CNV loss 17160897

Additional Variant Information for LINC01879 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01879

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01879 Gene

Disorders for LINC01879 Gene

Additional Disease Information for LINC01879

No disorders were found for LINC01879 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01879 Gene

Publications for LINC01879 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01879 Gene

Products for LINC01879 Gene

Sources for LINC01879 Gene