Aliases for LINC01877 Gene

Subcategory (RNA class) for LINC01877 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01877 Gene

  • Long Intergenic Non-Protein Coding RNA 1877 2 3 5
  • LINC01877 2 168
  • HSALNG0021435 167
  • NONHSAG030194 92

External Ids for LINC01877 Gene

Summaries for LINC01877 Gene

GeneCards Summary for LINC01877 Gene

LINC01877 (Long Intergenic Non-Protein Coding RNA 1877) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01877 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01877 Gene

Genomics for LINC01877 Gene

GeneHancer (GH) Regulatory Elements for LINC01877 Gene

Promoters and enhancers for LINC01877 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J199609 Enhancer 0.2 Ensembl 500.7 +1.7 1733 0.4 LINC01877 lnc-SATB2-5
GH02J199659 Promoter 1.2 Ensembl CraniofacialAtlas 0.2 +51.4 51371 1.1 HDAC2 ZNF341 POLR2G E2F6 ZNF213 TFDP1 VEZF1 JUND SMARCA4 CCNT2 SEPHS1P6 SPATS2L lnc-SATB2-5 LINC01877
GH02J199629 Enhancer 0.3 Ensembl 0.4 +21.4 21433 0.6 ZNF18 TCF7L2 lnc-SATB2-5 LINC01877 SEPHS1P6
GH02J199737 Enhancer 0.9 ENCODE 0.1 +130.8 130819 2.3 EP300 CTCF ZSCAN5C TCF12 NCOR1 FOXA1 KDM6A TCF7 TRIM28 REST FTCDNL1 SATB2 piR-61514-100 piR-50515 lnc-FTCDNL1-1 LINC01877
GH02J199692 Enhancer 0.5 Ensembl 0.2 +84.8 84832 0.2 FOXA1 POLR2A PRDM6 PRDM4 ZNF518A NFIA NR3C1 GATA3 NFIB ZBTB44 lnc-C2orf69-11 piR-61514-100 LINC01877 lnc-FTCDNL1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01877 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01877 Gene

Genomic Locations for LINC01877 Gene
chr2:199,608,068-199,750,341
(GRCh38/hg38)
Size:
142,274 bases
Orientation:
Plus strand
chr2:200,472,791-200,523,855
(GRCh37/hg19)
Size:
51,065 bases
Orientation:
Plus strand

Genomic View for LINC01877 Gene

Genes around LINC01877 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01877 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01877 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01877 Gene

Proteins for LINC01877 Gene

Post-translational modifications for LINC01877 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01877 Gene

Domains & Families for LINC01877 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01877 Gene

Function for LINC01877 Gene

Phenotypes From GWAS Catalog for LINC01877 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01877 Gene

Localization for LINC01877 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01877 Gene

Pathways & Interactions for LINC01877 Gene

PathCards logo

SuperPathways for LINC01877 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01877 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01877 Gene

Drugs & Compounds for LINC01877 Gene

No Compound Related Data Available

Transcripts for LINC01877 Gene

mRNA/cDNA for LINC01877 Gene

13 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
11 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01877 Gene

No ASD Table

Relevant External Links for LINC01877 Gene

GeneLoc Exon Structure for
LINC01877

Expression for LINC01877 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01877

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01877 Gene

Orthologs for LINC01877 Gene

Evolution for LINC01877 Gene

ENSEMBL:
Gene Tree for LINC01877 (if available)
TreeFam:
Gene Tree for LINC01877 (if available)

No data available for Orthologs for LINC01877 Gene

Paralogs for LINC01877 Gene

No data available for Paralogs for LINC01877 Gene

Variants for LINC01877 Gene

Additional dbSNP identifiers (rs#s) for LINC01877 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01877 Gene

Variant ID Type Subtype PubMed ID
esv3560808 CNV deletion 23714750
esv3593948 CNV loss 21293372

Additional Variant Information for LINC01877 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01877

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01877 Gene

Disorders for LINC01877 Gene

Additional Disease Information for LINC01877

No disorders were found for LINC01877 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01877 Gene

Publications for LINC01877 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LINC01877 Gene

Products for LINC01877 Gene

Sources for LINC01877 Gene