Aliases for LINC01873 Gene

Subcategory (RNA class) for LINC01873 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC01873 Gene

  • Long Intergenic Non-Protein Coding RNA 1873 2 3 5
  • LINC01873 2 5 165
  • NONHSAG028018.2 91

External Ids for LINC01873 Gene

Summaries for LINC01873 Gene

GeneCards Summary for LINC01873 Gene

LINC01873 (Long Intergenic Non-Protein Coding RNA 1873) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01873 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01873 Gene

Genomics for LINC01873 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01873 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J066384 Enhancer 0.3 UCNEbase 600.7 +1.4 1440 0.3 LINC01873 piR-45012-280 MEIS1 SPRED2
GH02J066389 Enhancer 0.8 ENCODE 0.4 +7.1 7138 1.9 CREB1 PRDM10 IKZF1 JUND PKNOX1 ZNF341 ATF7 SCRT2 ARNT ZBTB20 piR-33432-286 piR-46002-329 piR-45012-280 MEIS1-AS3 LINC01873 MEIS1 SPRED2
GH02J066369 Enhancer 0.2 Ensembl 0.4 -13.8 -13805 0.6 HSALNG0015581 LINC01873 MEIS1 SPRED2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01873 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01873 Gene

Genomic Locations for LINC01873 Gene
chr2:66,383,306-66,392,450
(GRCh38/hg38)
Size:
9,145 bases
Orientation:
Plus strand

Genomic View for LINC01873 Gene

Genes around LINC01873 on UCSC Golden Path with GeneCards custom track
LINC01873 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01873 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01873 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01873 Gene

Proteins for LINC01873 Gene

Post-translational modifications for LINC01873 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01873 Gene

Domains & Families for LINC01873 Gene

Gene Families for LINC01873 Gene

genes like me logo Genes that share domains with LINC01873: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01873 Gene

Function for LINC01873 Gene

Phenotypes From GWAS Catalog for LINC01873 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01873 Gene

Localization for LINC01873 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01873 Gene

Pathways & Interactions for LINC01873 Gene

PathCards logo

SuperPathways for LINC01873 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01873 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01873 Gene

Drugs & Compounds for LINC01873 Gene

No Compound Related Data Available

Transcripts for LINC01873 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01873 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003FE2C3_9606 lncRNA 1679 5

HGNC: 52692,

RefSeq: NR_130931,

Ensembl: ENST00000428647 (view in UCSC) ,

LNCipedia: LINC01873:3,

NONCODE: NONHSAT071221.2,

LINC01873 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01873 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01873 Gene

No ASD Table

Relevant External Links for LINC01873 Gene

GeneLoc Exon Structure for
LINC01873

Expression for LINC01873 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01873

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01873 Gene

Orthologs for LINC01873 Gene

Evolution for LINC01873 Gene

ENSEMBL:
Gene Tree for LINC01873 (if available)
TreeFam:
Gene Tree for LINC01873 (if available)

No data available for Orthologs for LINC01873 Gene

Paralogs for LINC01873 Gene

No data available for Paralogs for LINC01873 Gene

Variants for LINC01873 Gene

Additional dbSNP identifiers (rs#s) for LINC01873 Gene

Additional Variant Information for LINC01873 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01873

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01873 Gene

Disorders for LINC01873 Gene

No disorders were found for LINC01873 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01873 Gene

Publications for LINC01873 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01873 Gene

Sources for LINC01873 Gene