Aliases for LINC01870 Gene

Data sources for LINC01870 Gene:

Subcategory (RNA class) for LINC01870 Gene

lncRNA

Aliases for LINC01870 Gene

External Ids for LINC01870 Gene

Previous GeneCards Identifiers for LINC01870 Gene

  • GC02U904332

Summaries for LINC01870 Gene

GeneCards Summary for LINC01870 Gene

LINC01870 (Long Intergenic Non-Protein Coding RNA 1870) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01870 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01870 Gene

Genomics for LINC01870 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01870 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J101440 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12 -35.3 -35328 3.5 IKZF1 ZIC2 SMAD4 TAL1 RXRA RARA TEAD3 BCL6 CTCF RAD21 RFX8 LINC01870 RNF149 MAP4K4 lnc-CREG2-2 piR-55194-201 CREG2
GH02J101514 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE 11.5 +41.1 41148 6.3 CEBPA ETS1 CTCF THAP11 CEBPB FOXA2 VEZF1 MAFF SAP130 RXRA RFX8 LINC01870 SNORD89 MAP4K4 ENSG00000286047 PRCPP1
GH02J101434 Promoter/Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 12 -41.6 -41626 1.8 MAFF ZNF316 MAFK JUND TAF1 MAFG POLR2A MZF1 EP300 EZH2 lnc-CREG2-2 RFX8 LINC01870 BBIP1P1 piR-55194-201 CREG2
GH02J101432 Enhancer 1.1 FANTOM5 Ensembl dbSUPER 11.3 -43.8 -43782 1 FEZF1 ZNF341 ZNF843 BCL11B ZNF316 FOSL1 PRDM6 NFE2 ZBTB1 ZFP37 RFX8 LINC01870 lnc-CREG2-2 lnc-CREG2-1 CREG2
GH02J101446 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -30.1 -30075 1.6 SPI1 JUND POLR2A EP300 FOS RFX8 LINC01870 MAP4K4 RNF149 lnc-CREG2-2 piR-55194-201 CREG2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01870 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01870 Gene

Latest Assembly
chr2:101,476,876-101,487,802
(GRCh38/hg38)
Size:
10,927 bases
Orientation:
Plus strand

Previous Assembly
chr2:102,095,852-102,103,284
(GRCh37/hg19 by Ensembl)
Size:
7,433 bases
Orientation:
Plus strand

Genomic View for LINC01870 Gene

Genes around LINC01870 on UCSC Golden Path with GeneCards custom track
LINC01870 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01870 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01870 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01870 Gene

Proteins for LINC01870 Gene

Post-translational modifications for LINC01870 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01870 Gene

Domains & Families for LINC01870 Gene

Gene Families for LINC01870 Gene

genes like me logo Genes that share domains with LINC01870: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01870 Gene

Function for LINC01870 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01870 Gene

Localization for LINC01870 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01870 Gene

Pathways & Interactions for LINC01870 Gene

PathCards logo

SuperPathways for LINC01870 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01870 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01870 Gene

Drugs & Compounds for LINC01870 Gene

No Compound Related Data Available

Transcripts for LINC01870 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01870 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002EC484_9606 lncRNA 393 4

Ensembl: ENST00000427042 (view in UCSC) ,

LncBook: HSALNT0036570,

LNCipedia: LINC01870:3,

NONCODE: NONHSAT072828.2,

URS0001BE22AC_9606 lncRNA 1064 1

LncBook: HSALNT0036569,

URS0001BCEBBC_9606 lncRNA 390 1

LncBook: HSALNT0036570,

LINC01870 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01870 Gene

No ASD Table

Relevant External Links for LINC01870 Gene

GeneLoc Exon Structure for
LINC01870

No data available for mRNA/cDNA for LINC01870 Gene

Expression for LINC01870 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01870 Gene

Orthologs for LINC01870 Gene

Evolution for LINC01870 Gene

ENSEMBL:
Gene Tree for LINC01870 (if available)
TreeFam:
Gene Tree for LINC01870 (if available)

No data available for Orthologs for LINC01870 Gene

Paralogs for LINC01870 Gene

No data available for Paralogs for LINC01870 Gene

Variants for LINC01870 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01870 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01870 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01870

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01870 Gene

Disorders for LINC01870 Gene

No disorders were found for LINC01870 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01870 Gene

Publications for LINC01870 Gene

No publications were found for LINC01870 Gene.

No data available for Mastermind for LINC01870 Gene

Products for LINC01870 Gene

Sources for LINC01870 Gene