Aliases for LINC01870 Gene

Subcategory (RNA class) for LINC01870 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01870 Gene

  • Long Intergenic Non-Protein Coding RNA 1870 2 3 5
  • LINC01870 2 168
  • HSALNG0017377 167
  • NONHSAG028735 92

External Ids for LINC01870 Gene

Previous GeneCards Identifiers for LINC01870 Gene

  • GC02U904332

Summaries for LINC01870 Gene

GeneCards Summary for LINC01870 Gene

LINC01870 (Long Intergenic Non-Protein Coding RNA 1870) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01870 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01870 Gene

Genomics for LINC01870 Gene

GeneHancer (GH) Regulatory Elements for LINC01870 Gene

Promoters and enhancers for LINC01870 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J101478 Enhancer 0.6 Ensembl dbSUPER 500.7 0.0 -31 2.5 EP300 USF1 CREB1 POLR2A SMARCA4 CEBPB LINC01870 RFX8
GH02J101440 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12 -37.8 -37842 3.5 ZIC2 SKI CTCF RAD21 ZNF205 SPI1 NR2F2 USF1 TAL1 SMAD4 RFX8 LINC01870 RNF149 MAP4K4 lnc-CREG2-2 piR-55194-201
GH02J101434 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 12 -44.1 -44140 1.8 TEAD4 HDAC2 ZNF316 MAFF MAFK JUND KLF17 MAFG RAD21 TAF1 lnc-CREG2-2 RFX8 LINC01870 BBIP1P1 piR-55194-201
GH02J101514 Enhancer 1.1 FANTOM5 ENCODE 11.5 +38.6 38634 6.3 CTCF TCF12 JUND FOS POLR2A TEAD1 ZBTB26 SMC3 NR2F2 HDAC2 RFX8 LINC01870 SNORD89 MAP4K4 ENSG00000232556 PRCPP1 RPS6P3
GH02J101432 Enhancer 1.1 FANTOM5 Ensembl dbSUPER 11.3 -46.3 -46297 1 ATF2 ZNF341 OSR2 BCL11A WT1 ZNF316 TCF7L2 ZNF263 NFE2 FOSL1 RFX8 LINC01870 lnc-CREG2-2 lnc-CREG2-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01870 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01870 Gene

Genomic Locations for LINC01870 Gene
chr2:101,479,390-101,486,822
(GRCh38/hg38)
Size:
7,433 bases
Orientation:
Plus strand
chr2:102,095,852-102,103,284
(GRCh37/hg19)
Size:
7,433 bases
Orientation:
Plus strand

Genomic View for LINC01870 Gene

Genes around LINC01870 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01870 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01870 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01870 Gene

Proteins for LINC01870 Gene

Post-translational modifications for LINC01870 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01870 Gene

Domains & Families for LINC01870 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01870 Gene

Function for LINC01870 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01870 Gene

Localization for LINC01870 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01870 Gene

Pathways & Interactions for LINC01870 Gene

PathCards logo

SuperPathways for LINC01870 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01870 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01870 Gene

Drugs & Compounds for LINC01870 Gene

No Compound Related Data Available

Transcripts for LINC01870 Gene

mRNA/cDNA for LINC01870 Gene

1 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01870 Gene

No ASD Table

Relevant External Links for LINC01870 Gene

GeneLoc Exon Structure for
LINC01870

Expression for LINC01870 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01870 Gene

Orthologs for LINC01870 Gene

Evolution for LINC01870 Gene

ENSEMBL:
Gene Tree for LINC01870 (if available)
TreeFam:
Gene Tree for LINC01870 (if available)

No data available for Orthologs for LINC01870 Gene

Paralogs for LINC01870 Gene

No data available for Paralogs for LINC01870 Gene

Variants for LINC01870 Gene

Additional dbSNP identifiers (rs#s) for LINC01870 Gene

Additional Variant Information for LINC01870 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01870

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01870 Gene

Disorders for LINC01870 Gene

No disorders were found for LINC01870 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01870 Gene

Publications for LINC01870 Gene

No publications were found for LINC01870 Gene.

No data available for Mastermind for LINC01870 Gene

Products for LINC01870 Gene

Sources for LINC01870 Gene