Aliases for LINC01869 Gene

Data sources for LINC01869 Gene:

Subcategory (RNA class) for LINC01869 Gene

lncRNA

Aliases for LINC01869 Gene

External Ids for LINC01869 Gene

Summaries for LINC01869 Gene

GeneCards Summary for LINC01869 Gene

LINC01869 (Long Intergenic Non-Protein Coding RNA 1869) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01869 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01869 Gene

Genomics for LINC01869 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01869 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01869 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01869 Gene

Latest Assembly
chr19:50,804,722-50,818,966
(GRCh38/hg38)
Size:
14,245 bases
Orientation:
Plus strand

Previous Assembly
chr19:51,320,937-51,322,134
(GRCh37/hg19 by Entrez Gene)
Size:
1,198 bases
Orientation:
Plus strand

chr19:51,320,937-51,322,134
(GRCh37/hg19 by Ensembl)
Size:
1,198 bases
Orientation:
Plus strand

Genomic View for LINC01869 Gene

Genes around LINC01869 on UCSC Golden Path with GeneCards custom track
LINC01869 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01869 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01869 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01869 Gene

Proteins for LINC01869 Gene

Post-translational modifications for LINC01869 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01869 Gene

Domains & Families for LINC01869 Gene

Gene Families for LINC01869 Gene

genes like me logo Genes that share domains with LINC01869: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01869 Gene

Function for LINC01869 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01869 Gene

Localization for LINC01869 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01869 Gene

Pathways & Interactions for LINC01869 Gene

PathCards logo

SuperPathways for LINC01869 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01869 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01869 Gene

Drugs & Compounds for LINC01869 Gene

No Compound Related Data Available

Transcripts for LINC01869 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01869 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000759A0B_9606 lncRNA 936 1

RefSeq: NR_038359,

URS0000D5C719_9606 lncRNA 2408 2

LncBook: HSALNT0261559,

LNCipedia: LINC01869:20,

URS0000D5BF76_9606 lncRNA 2172 2

LncBook: HSALNT0261560,

LNCipedia: LINC01869:21,

URS00008B7D02_9606 lncRNA 1454 2

LNCipedia: LINC01869:22,

NONCODE: NONHSAT067370.2,

URS00009C60A5_9606 lncRNA 1047 2

LncBook: HSALNT0261575,

LNCipedia: LINC01869:24,

LINC01869 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01869 Gene

1 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01869 Gene

No ASD Table

Relevant External Links for LINC01869 Gene

GeneLoc Exon Structure for
LINC01869

Expression for LINC01869 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01869

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01869 Gene

Orthologs for LINC01869 Gene

Evolution for LINC01869 Gene

ENSEMBL:
Gene Tree for LINC01869 (if available)
TreeFam:
Gene Tree for LINC01869 (if available)

No data available for Orthologs for LINC01869 Gene

Paralogs for LINC01869 Gene

No data available for Paralogs for LINC01869 Gene

Variants for LINC01869 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01869 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01869 Gene

Variant ID Type Subtype PubMed ID
dgv203n21 CNV loss 19592680
dgv204n21 CNV loss 19592680
esv3583463 CNV loss 25503493
esv3583464 CNV loss 25503493
nsv1140251 OTHER inversion 24896259
nsv516450 CNV loss 19592680

Additional Variant Information for LINC01869 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01869

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01869 Gene

Disorders for LINC01869 Gene

Additional Disease Information for LINC01869

No disorders were found for LINC01869 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01869 Gene

Publications for LINC01869 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. Pooled-matrix protein interaction screens using Barcode Fusion Genetics. (PMID: 27107012) Yachie N … Roth FP (Molecular systems biology 2016) 3
  3. Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment. (PMID: 15782160) Kim J … Iyer VR (Nature methods 2005) 3

Products for LINC01869 Gene

Sources for LINC01869 Gene