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LINC01869 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 1869

GCID:
GC19P050808
GIFtS:
11
Genes Participants
UDN Logo

Aliases for LINC01869 Gene

Subcategory (RNA class) for LINC01869 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01869 Gene

  • Long Intergenic Non-Protein Coding RNA 1869 2 3 5
  • CTD-2568A17.5 3

External Ids for LINC01869 Gene

Summaries for LINC01869 Gene

GeneCards Summary for LINC01869 Gene

LINC01869 (Long Intergenic Non-Protein Coding RNA 1869) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01869 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01869 Gene

Genomics for LINC01869 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LINC01869 Gene

Promoters and enhancers for LINC01869 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19I050802 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 19.5 -4.6 -4591 4.2 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT ARID4B NEUROD1 SIN3A FEZF1 DMAP1 C19orf48 GC19M050829 GC19M050838 SNORD88C POLD1 PTOV1-AS2 NUP62 PNKP ZNF175 CTU1
GH19I050720 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 10.7 -85.5 -85518 5.7 HDGF SIN3A ZNF2 ZBTB7B POLR2B CBX5 E2F8 FOS KLF13 SP3 CLEC11A C19orf48 GPR32 AKT1S1 SNORD88A SNORD88B SNORD88C LINC01869 NUP62 KLK1
GH19I050835 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +27.4 27373 1.7 HDGF PKNOX1 ATF1 ARNT SIN3A FEZF1 GLI4 ZNF48 ZNF121 POLR2B KLK15 ZNF175 NUP62 PTOV1-AS2 LINC01869 SNORD88C C19orf48 KLK2 SNORD88A SNORD88B
GH19I050356 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -450.4 -450383 3 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 POLR2B ZNF766 E2F8 NAPSB POLD1 NUP62 ENSG00000268047 KCNC3 SNORD35A PTOV1-AS2 PNKP IRF3 SNORD35B
GH19I050555 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10 -252.3 -252332 2 HDGF ATF1 SIN3A ZNF2 ZNF48 ZNF121 GLIS2 ZNF207 ZNF143 ATF7 ENSG00000268231 ASPDH JOSD2 PTOV1 LINC01869 C19orf48 SNORD88C KLK4 C19orf81 SYT3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01869 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01869 Gene

Genomic Locations for LINC01869 Gene
chr19:50,808,874-50,818,880
(GRCh38/hg38)
Size:
10,007 bases
Orientation:
Plus strand
chr19:51,320,937-51,322,134
(GRCh37/hg19)

Genomic View for LINC01869 Gene

Genes around LINC01869 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01869 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01869 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01869 Gene

Proteins for LINC01869 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01869 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01869 Gene

Domains & Families for LINC01869 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01869 Gene

Function for LINC01869 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01869 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01869 Gene

Localization for LINC01869 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01869 Gene

Pathways & Interactions for LINC01869 Gene

SuperPathways for LINC01869 Gene

PathCards logo More details on SuperPathways for LINC01869
No Data Available

Interacting Proteins for LINC01869 Gene

Gene Ontology (GO) - Biological Process for LINC01869 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01869 Gene

Drugs & Compounds for LINC01869 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01869 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01869 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01869 Gene

No ASD Table

Relevant External Links for LINC01869 Gene

GeneLoc Exon Structure for
LINC01869
ECgene alternative splicing isoforms for
LINC01869

Expression for LINC01869 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01869 Gene

Orthologs for LINC01869 Gene

Evolution for LINC01869 Gene

ENSEMBL:
Gene Tree for LINC01869 (if available)
TreeFam:
Gene Tree for LINC01869 (if available)

No data available for Orthologs for LINC01869 Gene

Paralogs for LINC01869 Gene

No data available for Paralogs for LINC01869 Gene

Variants for LINC01869 Gene

Sequence variations from dbSNP and Humsavar for LINC01869 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1001072476 -- 50,815,869(+) C/T upstream_transcript_variant
rs1002588792 -- 50,817,500(+) T/G upstream_transcript_variant
rs1003433706 -- 50,818,268(+) C/G/T non_coding_transcript_variant
rs1003829273 -- 50,817,465(+) C/T upstream_transcript_variant
rs1003891474 -- 50,817,159(+) G/A upstream_transcript_variant

Additional Variant Information for LINC01869 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01869

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01869 Gene

Disorders for LINC01869 Gene

Additional Disease Information for LINC01869

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01869 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01869 Gene

Publications for LINC01869 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment. (PMID: 15782160) Kim J … Iyer VR (Nature methods 2005) 3 58

Products for LINC01869 Gene

Sources for LINC01869 Gene

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