Aliases for LINC01863 Gene

Subcategory (RNA class) for LINC01863 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LINC01863 Gene

  • Long Intergenic Non-Protein Coding RNA 1863 2 3 5
  • LINC01863 2 170
  • NONHSAG042272 94
  • HSALNG0046713 169

External Ids for LINC01863 Gene

Previous GeneCards Identifiers for LINC01863 Gene

  • GC05U902794

Summaries for LINC01863 Gene

GeneCards Summary for LINC01863 Gene

LINC01863 (Long Intergenic Non-Protein Coding RNA 1863) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01863 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01863 Gene

Genomics for LINC01863 Gene

GeneHancer (GH) Regulatory Elements for LINC01863 Gene

Promoters and enhancers for LINC01863 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J173640 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 772.3 +1.2 1234 7.5 ZBTB40 SREBF1 FOXA1 ZNF217 HLF L3MBTL2 RAD21 CSDE1 SP1 CEBPG LINC01863 BOD1 ENSG00000253244 LINC01942 lnc-BOD1-5
GH05J173657 Enhancer 0.5 Ensembl 14.1 +15.2 15181 1.4 RAD21 SP1 CEBPA RXRA FOXA2 JUND HNF4A ATF3 EGR1 LINC01863 BOD1 lnc-BOD1-5 lnc-CPEB4-9
GH05J173714 Enhancer 0.7 ENCODE 5.7 +72.3 72264 1.1 SMARCE1 DACH1 SMARCA4 TRIM24 DPF2 CAVIN1 SMARCC1 SMARCC2 BRCA1 CEBPB BOD1 STC2 ENSG00000253244 LINC01863 lnc-CPEB4-8 piR-41195-021 LINC01484
GH05J173660 Enhancer 0.3 Ensembl 4.8 +17.7 17682 1.2 HNF4A RXRA LINC01942 LINC01863 lnc-CPEB4-9 lnc-BOD1-5
GH05J173622 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -16.0 -16019 8.2 MLX NR2F6 CC2D1A L3MBTL2 RAD21 RERE ELF3 SP1 MAFK CEBPG C5orf47 ENSG00000253244 NSG2 ENSG00000253955 BOD1 LINC01863
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01863 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01863 Gene

Genomic Locations for LINC01863 Gene
chr5:173,642,519-173,658,195
(GRCh38/hg38)
Size:
15,677 bases
Orientation:
Plus strand
chr5:173,069,522-173,085,197
(GRCh37/hg19)
Size:
15,676 bases
Orientation:
Plus strand

Genomic View for LINC01863 Gene

Genes around LINC01863 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01863 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01863 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01863 Gene

Proteins for LINC01863 Gene

Post-translational modifications for LINC01863 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01863 Gene

Domains & Families for LINC01863 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01863 Gene

Function for LINC01863 Gene

Phenotypes From GWAS Catalog for LINC01863 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01863 Gene

Localization for LINC01863 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01863 Gene

Pathways & Interactions for LINC01863 Gene

PathCards logo

SuperPathways for LINC01863 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01863 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01863 Gene

Drugs & Compounds for LINC01863 Gene

No Compound Related Data Available

Transcripts for LINC01863 Gene

mRNA/cDNA for LINC01863 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(3) LncBook transcripts :
(3) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01863 Gene

No ASD Table

Relevant External Links for LINC01863 Gene

GeneLoc Exon Structure for
LINC01863
ECgene alternative splicing isoforms for
LINC01863

Expression for LINC01863 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01863 Gene

Orthologs for LINC01863 Gene

Evolution for LINC01863 Gene

ENSEMBL:
Gene Tree for LINC01863 (if available)
TreeFam:
Gene Tree for LINC01863 (if available)

No data available for Orthologs for LINC01863 Gene

Paralogs for LINC01863 Gene

No data available for Paralogs for LINC01863 Gene

Variants for LINC01863 Gene

Sequence variations from dbSNP and Humsavar for LINC01863 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000180012 -- 173,644,620(+) C/A intron_variant
rs1000231012 -- 173,644,239(+) C/A intron_variant
rs1000321826 -- 173,640,681(+) T/A upstream_transcript_variant
rs1000514290 -- 173,643,325(+) C/T intron_variant
rs1000590854 -- 173,643,529(+) A/G intron_variant

Additional Variant Information for LINC01863 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01863

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01863 Gene

Disorders for LINC01863 Gene

No disorders were found for LINC01863 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01863 Gene

Publications for LINC01863 Gene

No publications were found for LINC01863 Gene.

No data available for External Links for LINC01863 Gene

Products for LINC01863 Gene

Sources for LINC01863 Gene