Aliases for LINC01862 Gene

Subcategory (RNA class) for LINC01862 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01862 Gene

  • Long Intergenic Non-Protein Coding RNA 1862 2 3 5 13
  • LINC01862 2 168
  • HSALNG0123781 167
  • NONHSAG024716 92

External Ids for LINC01862 Gene

Summaries for LINC01862 Gene

GeneCards Summary for LINC01862 Gene

LINC01862 (Long Intergenic Non-Protein Coding RNA 1862) is an RNA Gene, and is affiliated with the lncRNA class. An important paralog of this gene is NFIL3.

Additional gene information for LINC01862 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01862 Gene

Genomics for LINC01862 Gene

GeneHancer (GH) Regulatory Elements for LINC01862 Gene

Promoters and enhancers for LINC01862 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J008630 Promoter/Enhancer 1.2 Ensembl ENCODE 500.7 +0.8 768 1.6 FOXK2 TCF12 ZIC2 KDM6A TCF7 ZBTB7A SKI ZKSCAN8 FOXA2 NR2F2 LINC01862 ENSG00000270614 FJ601684-213
GH19J008639 Enhancer 1.1 FANTOM5 ENCODE 0.4 +9.8 9787 1.7 EP300 TCF12 NCOR1 TCF7 SKI TEAD1 ZBTB26 RBM25 FOXA2 SIN3A MYO1F ADAMTS10 ACTL9 PRAM1 ENSG00000270614 FJ601684-213 LINC01862
GH19J008637 Enhancer 0.8 ENCODE 0.4 +7.9 7884 1.1 TCF12 ZNF623 TEAD1 ZSCAN9 FOXA2 CEBPB SAP130 FOSL2 MBD1 SPI1 ADAMTS10 ACTL9 MYO1F FJ601684-213 LINC01862
GH19J008633 Enhancer 0.4 Ensembl 0.7 +3.3 3288 1.4 NR2F1 ZNF366 ESRRA ADAMTS10 ACTL9 MYO1F LINC01862 FJ601684-213
GH19J008654 Enhancer 0.7 ENCODE 0.4 +24.2 24242 0.3 CTCF ZIC2 REST RAD21 TRIM22 SMC3 KDM1A ZBTB17 GABPA SPI1 HSALNG0123782 FJ601684-213 LINC01862
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01862 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01862 Gene

Genomic Locations for LINC01862 Gene
chr19:8,630,613-8,677,993
(GRCh38/hg38)
Size:
47,381 bases
Orientation:
Plus strand
chr19:8,740,121-8,748,103
(GRCh37/hg19)
Size:
7,983 bases
Orientation:
Plus strand

Genomic View for LINC01862 Gene

Genes around LINC01862 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01862 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01862 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01862 Gene

Proteins for LINC01862 Gene

  • Protein details for LINC01862 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A5F9ZHS7-A0A5F9ZHS7_HUMAN
    Recommended name:
    Long intergenic non-protein coding RNA 1862
    Protein Accession:
    A0A5F9ZHS7

    Protein attributes for LINC01862 Gene

    Size:
    289 amino acids
    Molecular mass:
    31047 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01862 Gene

Post-translational modifications for LINC01862 Gene

No Post-translational modifications

Other Protein References for LINC01862 Gene

No data available for DME Specific Peptides for LINC01862 Gene

Domains & Families for LINC01862 Gene

Protein Domains for LINC01862 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01862: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01862 Gene

Function for LINC01862 Gene

Phenotypes From GWAS Catalog for LINC01862 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01862 Gene

Localization for LINC01862 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01862 Gene

Pathways & Interactions for LINC01862 Gene

PathCards logo

SuperPathways for LINC01862 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01862 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with LINC01862: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01862 Gene

Drugs & Compounds for LINC01862 Gene

No Compound Related Data Available

Transcripts for LINC01862 Gene

mRNA/cDNA for LINC01862 Gene

6 RNACentral transcripts :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01862 Gene

No ASD Table

Relevant External Links for LINC01862 Gene

GeneLoc Exon Structure for
LINC01862

Expression for LINC01862 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01862

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01862 Gene

Orthologs for LINC01862 Gene

Evolution for LINC01862 Gene

ENSEMBL:
Gene Tree for LINC01862 (if available)
TreeFam:
Gene Tree for LINC01862 (if available)

No data available for Orthologs for LINC01862 Gene

Paralogs for LINC01862 Gene

Paralogs for LINC01862 Gene

genes like me logo Genes that share paralogs with LINC01862: view

Variants for LINC01862 Gene

Additional dbSNP identifiers (rs#s) for LINC01862 Gene

Additional Variant Information for LINC01862 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01862

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01862 Gene

Disorders for LINC01862 Gene

No disorders were found for LINC01862 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01862 Gene

Publications for LINC01862 Gene

  1. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 13 54

No data available for Mastermind for LINC01862 Gene

Products for LINC01862 Gene

Sources for LINC01862 Gene