Aliases for LINC01857 Gene

Subcategory (RNA class) for LINC01857 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01857 Gene

  • Long Intergenic Non-Protein Coding RNA 1857 2 3 5
  • LINC01857 2 168
  • HSALNG0021881 167
  • NONHSAG030374 92

External Ids for LINC01857 Gene

Summaries for LINC01857 Gene

GeneCards Summary for LINC01857 Gene

LINC01857 (Long Intergenic Non-Protein Coding RNA 1857) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01857 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01857 Gene

Genomics for LINC01857 Gene

GeneHancer (GH) Regulatory Elements for LINC01857 Gene

Promoters and enhancers for LINC01857 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J207661 Promoter/Enhancer 1.1 Ensembl ENCODE 509.8 +0.7 660 2.2 ZBTB40 RELA TRIM22 POLR2A OSR2 BCL11A ZNF384 SPI1 ELF1 ZNF335 LINC01857 ENSG00000200764 METTL21A CCNYL1 lnc-METTL21A-1
GH02J207623 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 6 -36.7 -36654 4.4 RXRA HNRNPK ZBTB40 EP300 CTCF SIN3A NRF1 MYC POLR2G SP1 METTL21A lnc-FZD5-3 lnc-CREB1-10 FASTKD2 CREB1 PIKFYVE CCNYL1 LINC01857
GH02J207631 Enhancer 1.2 Ensembl ENCODE dbSUPER 6.5 -28.5 -28518 7.3 EP300 ZNF217 TCF12 NCOR1 FOS CUX1 ZBTB25 CHD1 TEAD1 GATAD2B METTL21A CCNYL1 PPP1R14BP2 RNU6-664P ENSG00000200764 FZD5 LINC01857 RPS29P9
GH02J207676 Enhancer 0.9 Ensembl ENCODE 7.4 +15.0 15047 3 JUND FOS MEF2C ZBTB17 ZNF384 FOSL2 IRF1 CEBPB JUN FOSL1 CCNYL1 METTL21A FZD5 LINC01857 PPP1R14BP2 RF00026-612 RNU6-664P lnc-METTL21A-1
GH02J207674 Enhancer 0.6 Ensembl ENCODE 5.2 +12.6 12633 1.4 CTCF RAD21 SMC3 POU5F1 NANOG ZNF140 lnc-METTL21A-1 CCNYL1 METTL21A FZD5 LINC01857 RF00026-612 RNU6-664P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01857 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01857 Gene

Genomic Locations for LINC01857 Gene
chr2:207,662,254-207,679,123
(GRCh38/hg38)
Size:
16,870 bases
Orientation:
Plus strand

Genomic View for LINC01857 Gene

Genes around LINC01857 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01857 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01857 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01857 Gene

Proteins for LINC01857 Gene

Post-translational modifications for LINC01857 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01857 Gene

Domains & Families for LINC01857 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01857 Gene

Function for LINC01857 Gene

Phenotypes From GWAS Catalog for LINC01857 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01857 Gene

Localization for LINC01857 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01857 Gene

Pathways & Interactions for LINC01857 Gene

PathCards logo

SuperPathways for LINC01857 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01857 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01857 Gene

Drugs & Compounds for LINC01857 Gene

No Compound Related Data Available

Transcripts for LINC01857 Gene

mRNA/cDNA for LINC01857 Gene

13 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
8 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01857 Gene

No ASD Table

Relevant External Links for LINC01857 Gene

GeneLoc Exon Structure for
LINC01857

Expression for LINC01857 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01857 Gene

Orthologs for LINC01857 Gene

Evolution for LINC01857 Gene

ENSEMBL:
Gene Tree for LINC01857 (if available)
TreeFam:
Gene Tree for LINC01857 (if available)

No data available for Orthologs for LINC01857 Gene

Paralogs for LINC01857 Gene

No data available for Paralogs for LINC01857 Gene

Variants for LINC01857 Gene

Additional dbSNP identifiers (rs#s) for LINC01857 Gene

Additional Variant Information for LINC01857 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01857

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01857 Gene

Disorders for LINC01857 Gene

Additional Disease Information for LINC01857

No disorders were found for LINC01857 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01857 Gene

Publications for LINC01857 Gene

  1. Correlation between lncRNA AC079767.4 variants and liver injury from antituberculosis treatment in West China. (PMID: 31405785) Zhao Z … Ying B (Journal of infection and chemotherapy : official journal of the Japan Society of Chemotherapy 2020) 2 3 54
  2. Significance of genetic polymorphisms in long non-coding RNA AC079767.4 in tuberculosis susceptibility and clinical phenotype in Western Chinese Han population. (PMID: 28424495) Zhao Z … Ying B (Scientific reports 2017) 2 3 54

Products for LINC01857 Gene

Sources for LINC01857 Gene