Aliases for LINC01856 Gene

Data sources for LINC01856 Gene:

RNA type for LINC01856 Gene

lncRNA

Aliases for LINC01856 Gene

External Ids for LINC01856 Gene

Summaries for LINC01856 Gene

GeneCards Summary for LINC01856 Gene

LINC01856 (Long Intergenic Non-Protein Coding RNA 1856) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01856 include Gastric Cancer.

Additional gene information for LINC01856 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01856 Gene

Genomics for LINC01856 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01856 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J129923 Promoter 0.7 Ensembl 250.7 +0.2 203 0.6 ZEB1 CTCF SIN3A RAD21 ZNF687 ZNF143 EZH2 ZNF335 LINC01856 lnc-POTEF-1 PLAC9P1 RAB6C
GH02J129933 Promoter/Enhancer 0.9 Ensembl ENCODE 0.4 +11.6 11606 2.4 ZNF366 KDM1A EZH2 PLAC9P1 lnc-POTEF-1 piR-61945-285 RAB6C-AS1 LINC01856 RAB6C
GH02J129929 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.4 +6.8 6802 2.2 JUND CTCF ATF2 GLIS1 CREB1 CHD2 RAB6C-AS1 CCDC115 PTPN18 PLAC9P1 lnc-POTEF-1 LINC01856 RAB6C
GH02J129908 Enhancer 0.2 Ensembl 0.4 -14.6 -14597 0.2 HSALNG0018753 RAB6C-AS1 LINC01856 RAB6C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01856 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01856 Gene

Latest Assembly
chr2:129,923,098-129,948,161
(GRCh38/hg38)
Size:
25,064 bases
Orientation:
Plus strand

Previous Assembly
chr2:130,680,750-130,704,276
(GRCh37/hg19 by Entrez Gene)
Size:
23,527 bases
Orientation:
Plus strand

chr2:130,680,750-130,704,276
(GRCh37/hg19 by Ensembl)
Size:
23,527 bases
Orientation:
Plus strand

Genomic View for LINC01856 Gene

Genes around LINC01856 on UCSC Golden Path with GeneCards custom track
LINC01856 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01856 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01856 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01856 Gene

Proteins for LINC01856 Gene

Post-translational modifications for LINC01856 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01856 Gene

Domains & Families for LINC01856 Gene

Gene Families for LINC01856 Gene

genes like me logo Genes that share domains with LINC01856: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01856 Gene

Function for LINC01856 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01856 Gene

Localization for LINC01856 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01856 Gene

Pathways & Interactions for LINC01856 Gene

PathCards logo

SuperPathways for LINC01856 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01856 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01856 Gene

Drugs & Compounds for LINC01856 Gene

No Compound Related Data Available

Transcripts for LINC01856 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01856 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00001C0197_9606 lncRNA 2398 4

RefSeq: NR_110285,

Ensembl: ENST00000450840 (view in UCSC) ,

LNCipedia: LINC01856:3,

NONCODE: NONHSAT074249.2,

URS0001BCAD7D_9606 lncRNA 6608 1

LncBook: HSALNT0039715,

URS0001BCC2A0_9606 lncRNA 3935 1

LncBook: HSALNT0039714,

URS0001BE95C5_9606 lncRNA 3758 1

LncBook: HSALNT0039718,

URS00009BC68C_9606 lncRNA 2432 1

NONCODE: NONHSAT182648.1,

LINC01856 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01856 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01856 Gene

No ASD Table

Relevant External Links for LINC01856 Gene

GeneLoc Exon Structure for
LINC01856

Expression for LINC01856 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01856 Gene

Orthologs for LINC01856 Gene

Evolution for LINC01856 Gene

ENSEMBL:
Gene Tree for LINC01856 (if available)
TreeFam:
Gene Tree for LINC01856 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01856

No data available for Orthologs for LINC01856 Gene

Paralogs for LINC01856 Gene

No data available for Paralogs for LINC01856 Gene

Variants for LINC01856 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01856 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01856 Gene

Variant ID Type Subtype PubMed ID
esv2751826 CNV gain 17911159
esv2759092 CNV gain+loss 17122850
esv29254 CNV loss 19812545
nsv1002178 CNV gain 25217958
nsv1003941 CNV gain 25217958
nsv10157 CNV loss 18304495
nsv428403 CNV loss 18775914
nsv459274 CNV loss 19166990
nsv583046 CNV loss 21841781
nsv821629 CNV loss 15273396
nsv834374 CNV gain 17160897
nsv961878 CNV duplication 23825009

Additional Variant Information for LINC01856 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01856
Leiden Open Variation Database (LOVD)
LINC01856

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01856 Gene

Disorders for LINC01856 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01856 Gene - From: LNC

Disorder Aliases PubMed IDs
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01856

genes like me logo Genes that share disorders with LINC01856: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01856 Gene

Publications for LINC01856 Gene

  1. Long noncoding RNA BC005927 upregulates EPHB4 and promotes gastric cancer metastasis under hypoxia. (PMID: 29383777) Liu X … Liu L (Cancer science 2018) 72

No data available for Mastermind for LINC01856 Gene

Products for LINC01856 Gene

Sources for LINC01856 Gene