Aliases for LINC01854 Gene

Data sources for LINC01854 Gene:

RNA type for LINC01854 Gene

lncRNA

Aliases for LINC01854 Gene

External Ids for LINC01854 Gene

Summaries for LINC01854 Gene

GeneCards Summary for LINC01854 Gene

LINC01854 (Long Intergenic Non-Protein Coding RNA 1854) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01854 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01854 Gene

Genomics for LINC01854 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01854 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J129252 Enhancer 0.6 Ensembl CraniofacialAtlas 5.7 +65.9 65863 1.8 SMC3 CTCF RAD21 ZNF143 HSALNG0018726 LINC01854 LOC105373612 lnc-RAB6C-4 RAB6C HS6ST1
GH02J129296 Enhancer 0.5 Ensembl 6.2 +21.9 21863 1.4 NFIC RAD21 ATF2 NFIB CTCF EP300 LINC01854 lnc-RAB6C-9 HSALNG0018726 lnc-RAB6C-4 RAB6C HS6ST1
GH02J129329 Enhancer 0.2 FANTOM5 0.4 -10.7 -10693 0 HSALNG0018728 LINC01854 lnc-RAB6C-4 RAB6C
GH02J129301 Enhancer 0.2 Ensembl 0.4 +17.0 16964 1.6 lnc-RAB6C-9 LINC01854 HSALNG0018726 lnc-RAB6C-4 RAB6C HS6ST1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01854 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01854 Gene

Latest Assembly
chr2:129,235,537-129,318,964
(GRCh38/hg38)
Size:
83,428 bases
Orientation:
Minus strand

Previous Assembly
chr2:129,999,746-130,031,464
(GRCh37/hg19 by Entrez Gene)
Size:
31,719 bases
Orientation:
Minus strand

chr2:129,999,746-130,031,421
(GRCh37/hg19 by Ensembl)
Size:
31,676 bases
Orientation:
Minus strand

Genomic View for LINC01854 Gene

Genes around LINC01854 on UCSC Golden Path with GeneCards custom track
LINC01854 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01854 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01854 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01854 Gene

Proteins for LINC01854 Gene

Post-translational modifications for LINC01854 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01854 Gene

Domains & Families for LINC01854 Gene

Gene Families for LINC01854 Gene

genes like me logo Genes that share domains with LINC01854: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01854 Gene

Function for LINC01854 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01854 Gene

Localization for LINC01854 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01854 Gene

Pathways & Interactions for LINC01854 Gene

PathCards logo

SuperPathways for LINC01854 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01854 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01854 Gene

Drugs & Compounds for LINC01854 Gene

No Compound Related Data Available

Transcripts for LINC01854 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01854 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075E38E_9606 lncRNA 2179 4

RefSeq: NR_122042,

LncBook: HSALNT0039635,

LNCipedia: LINC01854:18,

NONCODE: NONHSAT185526.1,

URS000075EDC6_9606 lncRNA 2168 4

RefSeq: NR_122041,

LncBook: HSALNT0039634,

LNCipedia: LINC01854:17,

NONCODE: NONHSAT185525.1,

URS000075A998_9606 lncRNA 2261 3

RefSeq: NR_122040,

LncBook: HSALNT0039633,

LNCipedia: LINC01854:16,

URS0000613501_9606 lncRNA 2218 3

Ensembl: ENST00000375987 (view in UCSC) ,

LNCipedia: LINC01854:19,

NONCODE: NONHSAT074236.2,

URS00009B4C7C_9606 lncRNA 2213 2

LncBook: HSALNT0039636,

NONCODE: NONHSAT185527.1,

LINC01854 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01854 Gene

1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01854 Gene

No ASD Table

Relevant External Links for LINC01854 Gene

GeneLoc Exon Structure for
LINC01854

Expression for LINC01854 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01854

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01854 Gene

Orthologs for LINC01854 Gene

Evolution for LINC01854 Gene

ENSEMBL:
Gene Tree for LINC01854 (if available)
TreeFam:
Gene Tree for LINC01854 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01854

No data available for Orthologs for LINC01854 Gene

Paralogs for LINC01854 Gene

No data available for Paralogs for LINC01854 Gene

Variants for LINC01854 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01854 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01854 Gene

Variant ID Type Subtype PubMed ID
esv2759091 CNV gain+loss 17122850
esv34116 CNV loss 18971310
nsv1006295 CNV loss 25217958
nsv2920 CNV deletion 18451855
nsv459274 CNV loss 19166990
nsv518253 CNV loss 19592680
nsv583046 CNV loss 21841781
nsv821629 CNV loss 15273396

Additional Variant Information for LINC01854 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01854
Leiden Open Variation Database (LOVD)
LINC01854

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01854 Gene

Disorders for LINC01854 Gene

Additional Disease Information for LINC01854

No disorders were found for LINC01854 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01854 Gene

Publications for LINC01854 Gene

  1. Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines. (PMID: 24483146) Li L … Wang L (BMC genomics 2014) 3
  2. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01854 Gene

Sources for LINC01854 Gene