Aliases for LINC01852 Gene

Subcategory (RNA class) for LINC01852 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01852 Gene

  • Long Intergenic Non-Protein Coding RNA 1852 2 3 5
  • LINC01852 2 168
  • NONHSAG016542 92
  • HSALNG0105101 167

External Ids for LINC01852 Gene

Previous GeneCards Identifiers for LINC01852 Gene

  • GC15U902363

Summaries for LINC01852 Gene

GeneCards Summary for LINC01852 Gene

LINC01852 (Long Intergenic Non-Protein Coding RNA 1852) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01852 include Lung Cancer Susceptibility 3 and Lung Cancer.

Additional gene information for LINC01852 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01852 Gene

Genomics for LINC01852 Gene

GeneHancer (GH) Regulatory Elements for LINC01852 Gene

Promoters and enhancers for LINC01852 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J038071 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.1 132 3.1 ZBTB40 POLR2G PHF8 TEAD4 ZFX CTCF ZNF10 ZIC2 POLR2A KDM6A LINC01852 lnc-TMCO5A-7 SPRED1 lnc-RASGRP1-5
GH15J038068 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +3.8 3826 2.3 ZNF217 EP300 SP1 FOS JUND RFX1 RELA RCOR1 MXI1 BCL11A SPRED1 LINC01852 lnc-TMCO5A-7 lnc-RASGRP1-5
GH15J038079 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.3 -10311 9.8 ZBTB40 SP1 EP300 RELA MEF2C RCOR1 TRIM22 BCL11A TCF12 ZNF316 SPRED1 LINC01852 hsa-miR-5095-153
GH15J038075 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.7 -3744 2.1 SPI1 NR4A1 SPRED1 FAM98B LINC01852 hsa-miR-5095-153
GH15J038062 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.4 +10.7 10707 2.2 RUNX3 LINC01852 lnc-TMCO5A-7 lnc-RASGRP1-5 LINC02345
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01852 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01852 Gene

Genomic Locations for LINC01852 Gene
chr15:38,062,028-38,072,990
(GRCh38/hg38)
Size:
10,963 bases
Orientation:
Minus strand
chr15:38,361,682-38,365,160
(GRCh37/hg19)
Size:
3,479 bases
Orientation:
Minus strand

Genomic View for LINC01852 Gene

Genes around LINC01852 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01852 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01852 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01852 Gene

Proteins for LINC01852 Gene

Post-translational modifications for LINC01852 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01852 Gene

Domains & Families for LINC01852 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01852 Gene

Function for LINC01852 Gene

Phenotypes From GWAS Catalog for LINC01852 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01852 Gene

Localization for LINC01852 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01852 Gene

Pathways & Interactions for LINC01852 Gene

PathCards logo

SuperPathways for LINC01852 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01852 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01852 Gene

Drugs & Compounds for LINC01852 Gene

No Compound Related Data Available

Transcripts for LINC01852 Gene

mRNA/cDNA for LINC01852 Gene

17 RNACentral transcripts :
3 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
4 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01852 Gene

No ASD Table

Relevant External Links for LINC01852 Gene

GeneLoc Exon Structure for
LINC01852

Expression for LINC01852 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01852 Gene

Orthologs for LINC01852 Gene

Evolution for LINC01852 Gene

ENSEMBL:
Gene Tree for LINC01852 (if available)
TreeFam:
Gene Tree for LINC01852 (if available)

No data available for Orthologs for LINC01852 Gene

Paralogs for LINC01852 Gene

No data available for Paralogs for LINC01852 Gene

Variants for LINC01852 Gene

Additional dbSNP identifiers (rs#s) for LINC01852 Gene

Additional Variant Information for LINC01852 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01852

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01852 Gene

Disorders for LINC01852 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01852 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
lung cancer susceptibility 3
  • lncr3
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01852

genes like me logo Genes that share disorders with LINC01852: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01852 Gene

Publications for LINC01852 Gene

  1. Long noncoding RNA ENST00000434223 suppressed tumor progression in non-small cell lung cancer. (PMID: 26883250) Chai X … Song Y (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2016) 2 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01852 Gene

Sources for LINC01852 Gene