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Aliases for LINC01849 Gene
Subcategory (RNA class) for LINC01849 Gene
lncRNA
Aliases for LINC01849 Gene
External Ids for LINC01849 Gene
- HGNC: 52665
- NCBI Entrez Gene: 105373507
- Ensembl: ENSG00000234988
Summaries for LINC01849 Gene
GeneCards Summary for LINC01849 Gene
LINC01849 (Long Intergenic Non-Protein Coding RNA 1849) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01849 Gene
- HGNC (52665)
- NCBI Entrez Gene (105373507)
- Ensembl (ENSG00000234988)
- Open Targets Platform(ENSG00000234988)
- Search for LINC01849 at DataMed
- Search for LINC01849 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01849 Gene
Genomics for LINC01849 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01849 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J100603 | Enhancer | 0.7 | FANTOM5 Ensembl ENCODE | 250.7 | +0.3 | 270 | 2 | PRDM10 NRF1 POLR2A | LINC01849 PDCL3 ENSG00000223947 RPL31 RF00017-3279 NPAS2 | |
| GH02J100601 | Enhancer | 0.2 | Ensembl | 250.7 | -1.8 | -1830 | 0.6 | LINC01849 PDCL3 ENSG00000223947 RPL31 lnc-PDCL3-3 NPAS2 | ||
| GH02J100606 | Enhancer | 0.9 | Ensembl ENCODE | 0.7 | +3.1 | 3117 | 0.9 | ZNF217 CTCF REST FOXA2 ETV4 SMC3 RAD21 RFX5 TEAD3 YY1 | LINC01849 RF00017-3279 PDCL3 NPAS2 | |
| GH02J100610 | Enhancer | 0.6 | Ensembl | 0.4 | +6.8 | 6753 | 0.6 | CTCF REST SMC3 RAD21 SAFB XRCC5 TARDBP GTF2F1 TRIM22 ZNF654 | RF00017-3279 NPAS2 NPAS2-AS1 LINC01849 PDCL3 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01849 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01849 Gene
Latest Assembly
- chr2:100,603,731-100,611,747
- (GRCh38/hg38)
- Size:
- 8,017 bases
- Orientation:
- Plus strand
Previous Assembly
- chr2:101,220,201-101,225,820
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 5,620 bases
- Orientation:
- Plus strand
- chr2:101,223,490-101,225,820
- (GRCh37/hg19 by Ensembl)
- Size:
- 2,331 bases
- Orientation:
- Plus strand
Genomic View for LINC01849 Gene
Genes around LINC01849 on UCSC Golden Path with GeneCards custom track
LINC01849 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2q11.2 by HGNC
- 2q11.2 by Entrez Gene
- 2q11.2 by Ensembl
LINC01849 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01849 Gene
Proteins for LINC01849 Gene
Post-translational modifications for LINC01849 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01849 Gene
Domains & Families for LINC01849 Gene
Gene Families for LINC01849 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01849 Gene
Function for LINC01849 Gene
Phenotypes From GWAS Catalog for LINC01849 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01849 Gene
Localization for LINC01849 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01849 Gene
Transcripts for LINC01849 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01849 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000009166E_9606 | lncRNA | 517 | 4 |
Ensembl: ENST00000414647 (view in UCSC) , LncBook: HSALNT0036444, LNCipedia: LINC01849:6, NONCODE: NONHSAT072784.2, |
| URS0000EF567D_9606 | lncRNA | 2745 | 1 |
Ensembl: ENST00000656514 (view in UCSC) , |
| URS0000EF033D_9606 | lncRNA | 867 | 1 |
Ensembl: ENST00000656519 (view in UCSC) , |
| URS0000BC45A9_9606 | lncRNA | 770 | 1 |
RefSeq: NR_146956, |
| URS0000EEC6BE_9606 | lncRNA | 678 | 1 |
Ensembl: ENST00000424342 (view in UCSC) , |
LINC01849 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01849 Gene
- GeneLoc Exon Structure for
- LINC01849
No data available for mRNA/cDNA for LINC01849 Gene
Expression for LINC01849 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01849 Gene
Orthologs for LINC01849 Gene
No data available for Orthologs for LINC01849 Gene
Paralogs for LINC01849 Gene
No data available for Paralogs for LINC01849 Gene
Variants for LINC01849 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC01849 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01849
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01849 Gene
Disorders for LINC01849 Gene
Additional Disease Information for LINC01849
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC01849 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01849 Gene
Publications for LINC01849 Gene
No publications were found for LINC01849 Gene.
No data available for Mastermind for LINC01849 Gene
Products for LINC01849 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01849
- Origene Custom Protein Services for LINC01849
- Browse OriGene Inhibitory RNA Products For LINC01849
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01849
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01849
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01849
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01849
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01849
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01849
Sources for LINC01849 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB