Aliases for LINC01849 Gene

Data sources for LINC01849 Gene:

Subcategory (RNA class) for LINC01849 Gene

lncRNA

Aliases for LINC01849 Gene

External Ids for LINC01849 Gene

Summaries for LINC01849 Gene

GeneCards Summary for LINC01849 Gene

LINC01849 (Long Intergenic Non-Protein Coding RNA 1849) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01849 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01849 Gene

Genomics for LINC01849 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01849 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J100603 Enhancer 0.7 FANTOM5 Ensembl ENCODE 250.7 +0.3 270 2 PRDM10 NRF1 POLR2A LINC01849 PDCL3 ENSG00000223947 RPL31 RF00017-3279 NPAS2
GH02J100601 Enhancer 0.2 Ensembl 250.7 -1.8 -1830 0.6 LINC01849 PDCL3 ENSG00000223947 RPL31 lnc-PDCL3-3 NPAS2
GH02J100606 Enhancer 0.9 Ensembl ENCODE 0.7 +3.1 3117 0.9 ZNF217 CTCF REST FOXA2 ETV4 SMC3 RAD21 RFX5 TEAD3 YY1 LINC01849 RF00017-3279 PDCL3 NPAS2
GH02J100610 Enhancer 0.6 Ensembl 0.4 +6.8 6753 0.6 CTCF REST SMC3 RAD21 SAFB XRCC5 TARDBP GTF2F1 TRIM22 ZNF654 RF00017-3279 NPAS2 NPAS2-AS1 LINC01849 PDCL3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01849 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01849 Gene

Latest Assembly
chr2:100,603,731-100,611,747
(GRCh38/hg38)
Size:
8,017 bases
Orientation:
Plus strand

Previous Assembly
chr2:101,220,201-101,225,820
(GRCh37/hg19 by Entrez Gene)
Size:
5,620 bases
Orientation:
Plus strand

chr2:101,223,490-101,225,820
(GRCh37/hg19 by Ensembl)
Size:
2,331 bases
Orientation:
Plus strand

Genomic View for LINC01849 Gene

Genes around LINC01849 on UCSC Golden Path with GeneCards custom track
LINC01849 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01849 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01849 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01849 Gene

Proteins for LINC01849 Gene

Post-translational modifications for LINC01849 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01849 Gene

Domains & Families for LINC01849 Gene

Gene Families for LINC01849 Gene

genes like me logo Genes that share domains with LINC01849: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01849 Gene

Function for LINC01849 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01849 Gene

Localization for LINC01849 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01849 Gene

Pathways & Interactions for LINC01849 Gene

PathCards logo

SuperPathways for LINC01849 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01849 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01849 Gene

Drugs & Compounds for LINC01849 Gene

No Compound Related Data Available

Transcripts for LINC01849 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01849 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000009166E_9606 lncRNA 517 4

Ensembl: ENST00000414647 (view in UCSC) ,

LncBook: HSALNT0036444,

LNCipedia: LINC01849:6,

NONCODE: NONHSAT072784.2,

URS0000EF567D_9606 lncRNA 2745 1

Ensembl: ENST00000656514 (view in UCSC) ,

URS0000EF033D_9606 lncRNA 867 1

Ensembl: ENST00000656519 (view in UCSC) ,

URS0000BC45A9_9606 lncRNA 770 1

RefSeq: NR_146956,

URS0000EEC6BE_9606 lncRNA 678 1

Ensembl: ENST00000424342 (view in UCSC) ,

LINC01849 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01849 Gene

No ASD Table

Relevant External Links for LINC01849 Gene

GeneLoc Exon Structure for
LINC01849

No data available for mRNA/cDNA for LINC01849 Gene

Expression for LINC01849 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01849 Gene

Orthologs for LINC01849 Gene

Evolution for LINC01849 Gene

ENSEMBL:
Gene Tree for LINC01849 (if available)
TreeFam:
Gene Tree for LINC01849 (if available)

No data available for Orthologs for LINC01849 Gene

Paralogs for LINC01849 Gene

No data available for Paralogs for LINC01849 Gene

Variants for LINC01849 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01849 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01849 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01849

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01849 Gene

Disorders for LINC01849 Gene

Additional Disease Information for LINC01849

No disorders were found for LINC01849 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01849 Gene

Publications for LINC01849 Gene

No publications were found for LINC01849 Gene.

No data available for Mastermind for LINC01849 Gene

Products for LINC01849 Gene

Sources for LINC01849 Gene