Aliases for LINC01842 Gene

Subcategory (RNA class) for LINC01842 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01842 Gene

  • Long Intergenic Non-Protein Coding RNA 1842 2 3 5
  • LINC01842 2 170
  • HSALNG0124295 169
  • NONHSAG024953 94
  • CTC-548K16.1 3

External Ids for LINC01842 Gene

Summaries for LINC01842 Gene

GeneCards Summary for LINC01842 Gene

LINC01842 (Long Intergenic Non-Protein Coding RNA 1842) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01842 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01842 Gene

Genomics for LINC01842 Gene

GeneHancer (GH) Regulatory Elements for LINC01842 Gene

Promoters and enhancers for LINC01842 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J014333 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 758.4 +0.4 380 1.8 POLR2A ZNF362 ZNF384 GLIS2 SP2 ZNF561 MAZ STAT1 TCF7L2 BCOR LINC01842 lnc-ADGRE5-4 LINC01841
GH19J014431 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 4.6 +100.1 100127 4.1 ZNF24 ZBTB40 CTCF ZBTB6 RBPJ SMARCE1 USF2 ELF1 HLF L3MBTL2 PKN1 L13715-013 AKAP8 CCDC130 MRI1 DDX39A ASF1B BRD4 ZNF333 DCAF15
GH19J014354 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 6.8 +22.3 22307 2.1 ELF1 ZNF121 CBFA2T2 EGR1 IKZF1 HDAC1 LEF1 SOX6 ZNF318 EHMT2 ADGRE2 DNAJB1 LINC01842 ADGRE5 ZNF333 PKN1 DCAF15 RFX1 DDX39A IL27RA
GH19J014348 Enhancer 1 ENCODE dbSUPER 7.5 +15.0 15027 0.7 CTCF CC2D1A RAD21 ZNF121 SP1 ZNF280D ZKSCAN8 GTF2F1 SP7 EGR1 piR-43105-326 MIR181C DDX39A LINC01842 piR-60246-082 LINC01841
GH19J014309 Enhancer 0.9 Ensembl ENCODE 8.2 -24.0 -24041 1.8 ZNF24 RELA MLLT1 IKZF1 RNF2 TRIM22 IKZF2 CBFB EED DPF2 LINC01842 piR-52876 LINC01841
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01842 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01842 Gene

Genomic Locations for LINC01842 Gene
chr19:14,333,742-14,343,916
(GRCh38/hg38)
Size:
10,175 bases
Orientation:
Plus strand
chr19:14,444,555-14,454,725
(GRCh37/hg19)
Size:
10,171 bases
Orientation:
Plus strand

Genomic View for LINC01842 Gene

Genes around LINC01842 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01842 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01842 Gene

Proteins for LINC01842 Gene

Post-translational modifications for LINC01842 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01842 Gene

Domains & Families for LINC01842 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01842 Gene

Function for LINC01842 Gene

Phenotypes From GWAS Catalog for LINC01842 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01842 Gene

Localization for LINC01842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01842 Gene

Pathways & Interactions for LINC01842 Gene

PathCards logo

SuperPathways for LINC01842 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01842 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01842 Gene

Drugs & Compounds for LINC01842 Gene

No Compound Related Data Available

Transcripts for LINC01842 Gene

mRNA/cDNA for LINC01842 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :
(3) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01842 Gene

No ASD Table

Relevant External Links for LINC01842 Gene

GeneLoc Exon Structure for
LINC01842
ECgene alternative splicing isoforms for
LINC01842

Expression for LINC01842 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01842 Gene

Orthologs for LINC01842 Gene

Evolution for LINC01842 Gene

ENSEMBL:
Gene Tree for LINC01842 (if available)
TreeFam:
Gene Tree for LINC01842 (if available)

No data available for Orthologs for LINC01842 Gene

Paralogs for LINC01842 Gene

No data available for Paralogs for LINC01842 Gene

Variants for LINC01842 Gene

Sequence variations from dbSNP and Humsavar for LINC01842 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000216933 -- 14,338,694(+) G/C intron_variant
rs1000295103 -- 14,332,981(+) A/G upstream_transcript_variant
rs1000546726 -- 14,342,952(+) C/T intron_variant
rs1000568965 -- 14,339,147(+) C/A intron_variant
rs1000601229 -- 14,336,787(+) C/T intron_variant

Additional Variant Information for LINC01842 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01842

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01842 Gene

Disorders for LINC01842 Gene

Additional Disease Information for LINC01842

No disorders were found for LINC01842 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01842 Gene

Publications for LINC01842 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC01842 Gene

Sources for LINC01842 Gene