Aliases for LINC01842 Gene

Subcategory (RNA class) for LINC01842 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01842 Gene

  • Long Intergenic Non-Protein Coding RNA 1842 2 3 5
  • LINC01842 2 5 165
  • NONHSAG024953.2 91
  • HSALNG0124295 164
  • CTC-548K16.1 3

External Ids for LINC01842 Gene

Summaries for LINC01842 Gene

GeneCards Summary for LINC01842 Gene

LINC01842 (Long Intergenic Non-Protein Coding RNA 1842) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01842 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01842 Gene

Genomics for LINC01842 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01842 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J014333 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 608.4 +0.4 379 1.8 ZNF561 SP2 E2F4 MAZ POLR2A BCOR ZNF335 ZNF610 STAT1 TCF7L2 LINC01842 lnc-ADGRE5-4 LINC01841 ADGRE5 ADGRL1
GH19J014431 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 4.6 +100.1 100126 4.1 HNRNPL CTCF ZNF629 PRDM10 RFX1 IKZF1 ZNF692 RCOR2 JUND LARP7 PKN1 L13715-004 AKAP8 MRI1 CCDC130 ZNF333 LINC01842 NDUFB7 ENSG00000267474 PTGER1
GH19J014354 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 6.9 +22.3 22306 2.1 LEF1 HDAC1 SOX6 HMBOX1 EGR1 RUNX3 TCF12 ZNF318 TRIM28 TRIM24 ADGRE2 SNRPGP15 DNAJB1 LINC01842 ADGRE5 ZNF333 PKN1 DCAF15 RFX1 DDX39A
GH19J014348 Enhancer 1 ENCODE dbSUPER 7.5 +15.0 15026 0.7 CTCF PRDM10 ZNF629 IKZF1 TARDBP ZHX2 LARP7 ZNF143 PHF21A PATZ1 piR-43105-326 DDX39A LINC01842 piR-60246-082 LINC01841 ADGRE5 ADGRL1
GH19J014309 Enhancer 0.9 Ensembl ENCODE 8.2 -24.0 -24042 1.8 RNF2 RELA TCF12 IKZF2 TRIM22 EED DPF2 RELB RUNX3 GATAD2B LINC01842 piR-52876 LINC01841 ADGRE5 ADGRL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01842 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01842 Gene

Genomic Locations for LINC01842 Gene
chr19:14,333,743-14,343,916
(GRCh38/hg38)
Size:
10,174 bases
Orientation:
Plus strand
chr19:14,444,555-14,454,725
(GRCh37/hg19)
Size:
10,171 bases
Orientation:
Plus strand

Genomic View for LINC01842 Gene

Genes around LINC01842 on UCSC Golden Path with GeneCards custom track
LINC01842 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01842 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01842 Gene

Proteins for LINC01842 Gene

Post-translational modifications for LINC01842 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01842 Gene

Domains & Families for LINC01842 Gene

Gene Families for LINC01842 Gene

genes like me logo Genes that share domains with LINC01842: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01842 Gene

Function for LINC01842 Gene

Phenotypes From GWAS Catalog for LINC01842 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01842 Gene

Localization for LINC01842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01842 Gene

Pathways & Interactions for LINC01842 Gene

PathCards logo

SuperPathways for LINC01842 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01842 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01842 Gene

Drugs & Compounds for LINC01842 Gene

No Compound Related Data Available

Transcripts for LINC01842 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01842 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000785870_9606 lncRNA 768 3

Ensembl: ENST00000588275 (view in UCSC) ,

LncBook: HSALNT0256211,

LNCipedia: LINC01842:7,

URS00008C0A78_9606 lncRNA 765 2

HGNC: 52656,

RefSeq: NR_134916,

URS000049F7F3_9606 lncRNA 765 2

LNCipedia: LINC01842:6,

NONCODE: NONHSAT061406.2,

URS00009C045C_9606 lncRNA 763 2

LncBook: HSALNT0256212,

NONCODE: NONHSAT179485.1,

URS00008B2D37_9606 lncRNA 763 1

LNCipedia: LINC01842:5,

LINC01842 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01842 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01842 Gene

No ASD Table

Relevant External Links for LINC01842 Gene

GeneLoc Exon Structure for
LINC01842

Expression for LINC01842 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01842

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01842 Gene

Orthologs for LINC01842 Gene

Evolution for LINC01842 Gene

ENSEMBL:
Gene Tree for LINC01842 (if available)
TreeFam:
Gene Tree for LINC01842 (if available)

No data available for Orthologs for LINC01842 Gene

Paralogs for LINC01842 Gene

No data available for Paralogs for LINC01842 Gene

Variants for LINC01842 Gene

Additional dbSNP identifiers (rs#s) for LINC01842 Gene

Additional Variant Information for LINC01842 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01842

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01842 Gene

Disorders for LINC01842 Gene

No disorders were found for LINC01842 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01842 Gene

Publications for LINC01842 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01842 Gene

Sources for LINC01842 Gene