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Aliases for LINC01842 Gene

Subcategory (RNA class) for LINC01842 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01842 Gene

  • Long Intergenic Non-Protein Coding RNA 1842 2 3 5
  • CTC-548K16.1 3

External Ids for LINC01842 Gene

Summaries for LINC01842 Gene

GeneCards Summary for LINC01842 Gene

LINC01842 (Long Intergenic Non-Protein Coding RNA 1842) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01842 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01842 Gene

Genomics for LINC01842 Gene

GeneHancer (GH) Regulatory Elements for LINC01842 Gene

Promoters and enhancers for LINC01842 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J014333 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 608.4 +0.4 379 1.8 ZNF384 GLIS2 ZNF561 SP2 MAZ STAT1 TCF7L2 BCOR ZNF610 ZNF335 LINC01842 LINC01841
GH19J014431 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 4.6 +100.0 100027 4.3 CTCF ZFX ZKSCAN8 ZNF148 NKRF MLLT1 ZBTB7A SP7 SP1 SP5 PKN1 AKAP8 MRI1 CCDC130 ZNF333 LINC01842 NDUFB7 ENSG00000267474
GH19J014354 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 6.9 +22.3 22307 2.1 CBFA2T2 ZNF121 EGR1 IKZF1 LEF1 HDAC1 SOX6 RUNX3 ZNF318 EHMT2 ADGRE2 SNRPGP15 DNAJB1 LINC01842 ADGRE5 ZNF333 PKN1 DCAF15 RFX1 DDX39A
GH19J014348 Enhancer 1.1 ENCODE dbSUPER 7.5 +15.0 15027 0.7 SP1 CC2D1A CTCF ZKSCAN8 ZNF121 GTF2F1 ZBTB7A SP7 EGR1 RAD21 DDX39A LINC01842 LINC01841
GH19J014309 Enhancer 0.9 Ensembl ENCODE 8.2 -24.0 -24041 1.8 RELA MLLT1 IKZF1 RNF2 IKZF2 TRIM22 CBFB DPF2 EED RUNX3 LINC01842 PIR46875 LINC01841
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01842 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01842 Gene

Genomic Locations for LINC01842 Gene
chr19:14,333,742-14,343,916
(GRCh38/hg38)
Size:
10,175 bases
Orientation:
Plus strand
chr19:14,444,555-14,454,725
(GRCh37/hg19)
Size:
10,171 bases
Orientation:
Plus strand

Genomic View for LINC01842 Gene

Genes around LINC01842 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01842 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01842 Gene

Proteins for LINC01842 Gene

Post-translational modifications for LINC01842 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01842 Gene

Domains & Families for LINC01842 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01842 Gene

Function for LINC01842 Gene

Phenotypes From GWAS Catalog for LINC01842 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01842 Gene

Localization for LINC01842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01842 Gene

Pathways & Interactions for LINC01842 Gene

PathCards logo

SuperPathways for LINC01842 Gene

No Data Available

Interacting Proteins for LINC01842 Gene

Gene Ontology (GO) - Biological Process for LINC01842 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01842 Gene

Drugs & Compounds for LINC01842 Gene

No Compound Related Data Available

Transcripts for LINC01842 Gene

mRNA/cDNA for LINC01842 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01842 Gene

No ASD Table

Relevant External Links for LINC01842 Gene

GeneLoc Exon Structure for
LINC01842
ECgene alternative splicing isoforms for
LINC01842

Expression for LINC01842 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01842 Gene

Orthologs for LINC01842 Gene

Evolution for LINC01842 Gene

ENSEMBL:
Gene Tree for LINC01842 (if available)
TreeFam:
Gene Tree for LINC01842 (if available)

No data available for Orthologs for LINC01842 Gene

Paralogs for LINC01842 Gene

No data available for Paralogs for LINC01842 Gene

Variants for LINC01842 Gene

Sequence variations from dbSNP and Humsavar for LINC01842 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000216933 -- 14,338,694(+) G/C intron_variant
rs1000295103 -- 14,332,981(+) A/G upstream_transcript_variant
rs1000546726 -- 14,342,952(+) C/T intron_variant
rs1000568965 -- 14,339,147(+) C/A intron_variant
rs1000601229 -- 14,336,787(+) C/T intron_variant

Additional Variant Information for LINC01842 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01842

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01842 Gene

Disorders for LINC01842 Gene

Additional Disease Information for LINC01842

No disorders were found for LINC01842 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01842 Gene

Publications for LINC01842 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01842 Gene

Sources for LINC01842 Gene

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