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Aliases for LINC01841 Gene

Subcategory (RNA class) for LINC01841 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01841 Gene

  • Long Intergenic Non-Protein Coding RNA 1841 2 3 5
  • CTC-548K16.2 3

External Ids for LINC01841 Gene

Summaries for LINC01841 Gene

GeneCards Summary for LINC01841 Gene

LINC01841 (Long Intergenic Non-Protein Coding RNA 1841) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01841 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01841 Gene

Genomics for LINC01841 Gene

GeneHancer (GH) Regulatory Elements for LINC01841 Gene

Promoters and enhancers for LINC01841 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J014365 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 600.7 -0.9 -916 11.4 SP1 CBFA2T2 ZNF148 ZNF121 ZNF384 ZNF687 NFIB FOS RELA CREM LINC01841 ADGRE5 PKN1 TECR DDX39A ZNF333 DCAF15 IL27RA DNAJB1 RFX1
GH19J014362 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +6.6 6647 1.9 ZFX CBFA2T2 ZNF148 MLLT1 ZNF121 GTF2F1 ZSCAN21 MCM2 TRIM24 SP7 DCAF15 DDX39A RFX1 TECR ADGRE5 ZNF333 PKN1 ADGRE2 LINC01841 LINC01842
GH19J014361 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 +8.3 8275 1.1 CC2D1A ZNF121 ZNF384 MZF1 RAD21 GMEB1 ARID2 IKZF1 ZNF600 ZNF512 SNRPGP15 LINC01841 LINC01842
GH19J014377 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -7.9 -7853 0.5 PKNOX1 ZBTB17 HDGF TRIM25 ZBTB40 SMARCA5 ADGRE5 LINC01841
GH19J014354 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 +14.1 14147 2.1 CBFA2T2 ZNF121 EGR1 IKZF1 LEF1 HDAC1 SOX6 RUNX3 ZNF318 EHMT2 ADGRE2 SNRPGP15 DNAJB1 LINC01842 ADGRE5 ZNF333 PKN1 DCAF15 RFX1 DDX39A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01841 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01841 Gene

Genomic Locations for LINC01841 Gene
chr19:14,305,458-14,370,196
(GRCh38/hg38)
Size:
64,739 bases
Orientation:
Minus strand
chr19:14,416,270-14,481,008
(GRCh37/hg19)
Size:
64,739 bases
Orientation:
Minus strand

Genomic View for LINC01841 Gene

Genes around LINC01841 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01841 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01841 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01841 Gene

Proteins for LINC01841 Gene

Post-translational modifications for LINC01841 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01841 Gene

Domains & Families for LINC01841 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01841 Gene

Function for LINC01841 Gene

Phenotypes From GWAS Catalog for LINC01841 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01841 Gene

Localization for LINC01841 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01841 Gene

Pathways & Interactions for LINC01841 Gene

PathCards logo

SuperPathways for LINC01841 Gene

No Data Available

Interacting Proteins for LINC01841 Gene

Gene Ontology (GO) - Biological Process for LINC01841 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01841 Gene

Drugs & Compounds for LINC01841 Gene

No Compound Related Data Available

Transcripts for LINC01841 Gene

mRNA/cDNA for LINC01841 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01841 Gene

No ASD Table

Relevant External Links for LINC01841 Gene

GeneLoc Exon Structure for
LINC01841
ECgene alternative splicing isoforms for
LINC01841

Expression for LINC01841 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01841 Gene

Orthologs for LINC01841 Gene

Evolution for LINC01841 Gene

ENSEMBL:
Gene Tree for LINC01841 (if available)
TreeFam:
Gene Tree for LINC01841 (if available)

No data available for Orthologs for LINC01841 Gene

Paralogs for LINC01841 Gene

No data available for Paralogs for LINC01841 Gene

Variants for LINC01841 Gene

Sequence variations from dbSNP and Humsavar for LINC01841 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000008261 -- 14,318,226(-) T/C intron_variant
rs1000031231 -- 14,361,673(-) G/C intron_variant
rs1000042343 -- 14,314,853(-) T/G intron_variant
rs1000119999 -- 14,318,590(-) A/G intron_variant
rs1000126678 -- 14,320,721(-) T/C intron_variant

Additional Variant Information for LINC01841 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01841

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01841 Gene

Disorders for LINC01841 Gene

Additional Disease Information for LINC01841

No disorders were found for LINC01841 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01841 Gene

Publications for LINC01841 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01841 Gene

Sources for LINC01841 Gene

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