Aliases for LINC01840 Gene

Subcategory (RNA class) for LINC01840 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01840 Gene

  • Long Intergenic Non-Protein Coding RNA 1840 2 3 5
  • EIF2B5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • LINC01840 2 168
  • EIF2B5 Antisense RNA 1 2
  • HSALNG0031252 167
  • NONHSAG036866 92
  • EIF2B5-AS1 3

External Ids for LINC01840 Gene

Previous HGNC Symbols for LINC01840 Gene

  • EIF2B5-AS1

Summaries for LINC01840 Gene

GeneCards Summary for LINC01840 Gene

LINC01840 (Long Intergenic Non-Protein Coding RNA 1840) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01840 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01840 Gene

Genomics for LINC01840 Gene

GeneHancer (GH) Regulatory Elements for LINC01840 Gene

Promoters and enhancers for LINC01840 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J184556 Enhancer 0.3 dbSUPER 500.7 -0.3 -255 1.4 USF1 ZBTB17 LINC01840 LINC01839 HSALNG0031253
GH03J184811 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 10.7 -255.8 -255838 2.5 ZNF217 CTCF SIN3A NRF1 POLR2G USF1 SP1 PHF8 ZFX POLR2A VPS8 lnc-EPHB3-5 EPHB3 LINC01840 HSALNG0031276
GH03J184764 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 -210.1 -210088 5.6 ZNF263 TRIM28 TOE1 CTBP1 RBM25 KLF9 ZNF316 ARNT ZNF524 FOS LINC01840 EPHB3 MAGEF1 LINC02054 EIF4G1 CAMK2N2 RF00017-4194 LINC02069 piR-32405 LOC107986163
GH03J184634 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.3 -79.8 -79782 8.2 ZNF217 JUND FOS ZIC2 REST RFX1 CUX1 CTBP1 OSR2 ESRRA EPHB3 MAGEF1 ENSG00000228205 PARL YEATS2 DVL3 LINC01840 POLR2H EIF2B5 FAM131A
GH03J184726 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 -170.5 -170508 1.4 ZNF217 CTCF TEAD4 REST RAD21 TRIM22 MXI1 NR2F2 SMC3 ZBTB17 EPHB3 LINC01840 VPS8 LOC107986163 ENSG00000273403 LINC02069
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01840 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01840 Gene

Genomic Locations for LINC01840 Gene
chr3:184,546,714-184,556,919
(GRCh38/hg38)
Size:
10,206 bases
Orientation:
Minus strand
chr3:184,264,502-184,274,706
(GRCh37/hg19)
Size:
10,205 bases
Orientation:
Minus strand

Genomic View for LINC01840 Gene

Genes around LINC01840 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01840 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01840 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01840 Gene

Proteins for LINC01840 Gene

Post-translational modifications for LINC01840 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01840 Gene

Domains & Families for LINC01840 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01840 Gene

Function for LINC01840 Gene

Phenotypes From GWAS Catalog for LINC01840 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01840 Gene

Localization for LINC01840 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01840 Gene

Pathways & Interactions for LINC01840 Gene

PathCards logo

SuperPathways for LINC01840 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01840 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01840 Gene

Drugs & Compounds for LINC01840 Gene

No Compound Related Data Available

Transcripts for LINC01840 Gene

mRNA/cDNA for LINC01840 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01840 Gene

No ASD Table

Relevant External Links for LINC01840 Gene

GeneLoc Exon Structure for
LINC01840

Expression for LINC01840 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01840 Gene

Orthologs for LINC01840 Gene

Evolution for LINC01840 Gene

ENSEMBL:
Gene Tree for LINC01840 (if available)
TreeFam:
Gene Tree for LINC01840 (if available)

No data available for Orthologs for LINC01840 Gene

Paralogs for LINC01840 Gene

No data available for Paralogs for LINC01840 Gene

Variants for LINC01840 Gene

Additional dbSNP identifiers (rs#s) for LINC01840 Gene

Additional Variant Information for LINC01840 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01840

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01840 Gene

Disorders for LINC01840 Gene

Additional Disease Information for LINC01840

No disorders were found for LINC01840 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01840 Gene

Publications for LINC01840 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LINC01840 Gene

Products for LINC01840 Gene

Sources for LINC01840 Gene