Aliases for LINC01838 Gene

Subcategory (RNA class) for LINC01838 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01838 Gene

  • Long Intergenic Non-Protein Coding RNA 1838 2 3 5
  • LINC01838 2 5 165
  • NONHSAG025542.2 91
  • HSALNG0125539 164
  • CTC-523E23.6 3

External Ids for LINC01838 Gene

Previous GeneCards Identifiers for LINC01838 Gene

  • GC19P037093
  • GC19P037266
  • GC19P037347
  • GC19P037823
  • GC19P035583
  • GC19P036262
  • GC19P036441
  • GC19P036612
  • GC19P036770
  • GC19P036930

Summaries for LINC01838 Gene

GeneCards Summary for LINC01838 Gene

LINC01838 (Long Intergenic Non-Protein Coding RNA 1838) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01838 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01838 Gene

Genomics for LINC01838 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01838 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J034905 Promoter 0.6 EPDnew 600.7 +0.0 4 0.1 EZH2 POLR2A ZBTB33 ENSG00000271171 LINC01838 LOC105372377 piR-30436 piR-32654 piR-33004 piR-33176 piR-31133 piR-38652 piR-37511
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01838 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01838 Gene

Genomic Locations for LINC01838 Gene
chr19:34,905,301-34,908,727
(GRCh38/hg38)
Size:
3,427 bases
Orientation:
Plus strand
chr19:35,396,190-35,399,095
(GRCh37/hg19)
Size:
2,906 bases
Orientation:
Plus strand

Genomic View for LINC01838 Gene

Genes around LINC01838 on UCSC Golden Path with GeneCards custom track
LINC01838 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01838 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01838 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01838 Gene

Proteins for LINC01838 Gene

Post-translational modifications for LINC01838 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01838 Gene

Domains & Families for LINC01838 Gene

Gene Families for LINC01838 Gene

genes like me logo Genes that share domains with LINC01838: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01838 Gene

Function for LINC01838 Gene

Phenotypes From GWAS Catalog for LINC01838 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01838 Gene

Localization for LINC01838 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01838 Gene

Pathways & Interactions for LINC01838 Gene

PathCards logo

SuperPathways for LINC01838 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01838 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01838 Gene

Drugs & Compounds for LINC01838 Gene

No Compound Related Data Available

Transcripts for LINC01838 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01838 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008BAAB0_9606 lncRNA 1660 5

HGNC: 52654,

RefSeq: NR_146451,

LncBook: HSALNT0258763,

LNCipedia: LINC01838:8,

NONCODE: NONHSAT065659.2,

URS00004D5FAA_9606 lncRNA 1657 2

Ensembl: ENST00000595783 (view in UCSC) ,

LNCipedia: LINC01838:7,

URS00008B3A0B_9606 lncRNA 1697 2

LNCipedia: LINC01838:6,

NONCODE: NONHSAT065658.2,

URS00009B525E_9606 lncRNA 1657 2

LncBook: HSALNT0258764,

NONCODE: NONHSAT179676.1,

URS00008BD431_9606 lncRNA 1652 1

LNCipedia: LINC01838:9,

LINC01838 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01838 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01838 Gene

No ASD Table

Relevant External Links for LINC01838 Gene

GeneLoc Exon Structure for
LINC01838

Expression for LINC01838 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01838

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01838 Gene

Orthologs for LINC01838 Gene

Evolution for LINC01838 Gene

ENSEMBL:
Gene Tree for LINC01838 (if available)
TreeFam:
Gene Tree for LINC01838 (if available)

No data available for Orthologs for LINC01838 Gene

Paralogs for LINC01838 Gene

No data available for Paralogs for LINC01838 Gene

Variants for LINC01838 Gene

Additional dbSNP identifiers (rs#s) for LINC01838 Gene

Additional Variant Information for LINC01838 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01838

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01838 Gene

Disorders for LINC01838 Gene

No disorders were found for LINC01838 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01838 Gene

Publications for LINC01838 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01838 Gene

Products for LINC01838 Gene

Sources for LINC01838 Gene