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Aliases for LINC01835 Gene

Aliases for LINC01835 Gene

  • Long Intergenic Non-Protein Coding RNA 1835 2 3 5
  • Uncharacterized Protein LOC102724279 3

External Ids for LINC01835 Gene

Summaries for LINC01835 Gene

GeneCards Summary for LINC01835 Gene

LINC01835 (Long Intergenic Non-Protein Coding RNA 1835) is a Protein Coding gene.

Additional gene information for LINC01835 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01835 Gene

Genomics for LINC01835 Gene

GeneHancer (GH) Regulatory Elements for LINC01835 Gene

Promoters and enhancers for LINC01835 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J015863 Promoter/Enhancer 1.3 FANTOM5 Ensembl dbSUPER 622.7 +1.8 1787 1 EGR1 IKZF1 RFX1 NRF1 FOSL1 NFE2 SMARCE1 LINC01835 LOC105369202 CYP4F11 GC19P015860
GH19J015864 Enhancer 0.4 dbSUPER 637.5 -0.2 -212 0.8 HDAC1 CTBP1 IKZF1 LINC01835 GC19M015863 LOC105369202 CYP4F11
GH19J015866 Enhancer 0.4 dbSUPER 637 -1.9 -1936 0.7 SP1 YY1 LINC01835 GC19M015863 CYP4F11 GC19P015870
GH19J015865 Enhancer 0.2 FANTOM5 600.7 +0.4 449 0.1 LOC105369202 GC19M015863 LINC01835 OR10H3 OR10H2
GH19J015871 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 29.2 -6.8 -6797 0.6 KAT8 GABPA GABPB1 ZMYM3 POLR2A ZBTB40 ELF1 GC19P015870 CYP4F36P LINC01835 CYP4F12 CYP4F11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01835 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01835 Gene

Genomic Locations for LINC01835 Gene
chr19:15,851,993-15,864,904
(GRCh38/hg38)
Size:
12,912 bases
Orientation:
Minus strand

Genomic View for LINC01835 Gene

Genes around LINC01835 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01835 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01835 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01835 Gene

Proteins for LINC01835 Gene

Post-translational modifications for LINC01835 Gene

No Post-translational modifications

Other Protein References for LINC01835 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LINC01835 Gene

Domains & Families for LINC01835 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01835 Gene

Function for LINC01835 Gene

Phenotypes From GWAS Catalog for LINC01835 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01835 Gene

Localization for LINC01835 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01835 Gene

Pathways & Interactions for LINC01835 Gene

PathCards logo

SuperPathways for LINC01835 Gene

No Data Available

Interacting Proteins for LINC01835 Gene

Gene Ontology (GO) - Biological Process for LINC01835 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01835 Gene

Drugs & Compounds for LINC01835 Gene

No Compound Related Data Available

Transcripts for LINC01835 Gene

mRNA/cDNA for LINC01835 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01835 Gene

No ASD Table

Relevant External Links for LINC01835 Gene

GeneLoc Exon Structure for
LINC01835
ECgene alternative splicing isoforms for
LINC01835

Expression for LINC01835 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01835 Gene

Orthologs for LINC01835 Gene

Evolution for LINC01835 Gene

ENSEMBL:
Gene Tree for LINC01835 (if available)
TreeFam:
Gene Tree for LINC01835 (if available)

No data available for Orthologs for LINC01835 Gene

Paralogs for LINC01835 Gene

No data available for Paralogs for LINC01835 Gene

Variants for LINC01835 Gene

Sequence variations from dbSNP and Humsavar for LINC01835 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000594573 -- 15,864,530(-) A/G intron_variant
rs1000606594 -- 15,866,789(-) C/A/T upstream_transcript_variant
rs1000784617 -- 15,854,344(-) C/A intron_variant
rs1000805228 -- 15,862,645(-) G/A intron_variant
rs1000887978 -- 15,859,653(-) G/A intron_variant

Additional Variant Information for LINC01835 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01835

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01835 Gene

Disorders for LINC01835 Gene

Additional Disease Information for LINC01835

No disorders were found for LINC01835 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01835 Gene

Publications for LINC01835 Gene

  1. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim YC … Wang SM (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 58

Products for LINC01835 Gene

Sources for LINC01835 Gene

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