Aliases for LINC01829 Gene

Subcategory (RNA class) for LINC01829 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01829 Gene

  • Long Intergenic Non-Protein Coding RNA 1829 2 3 5
  • LINC01829 2 5 165
  • NONHSAG028037.2 91
  • NONHSAG028045.2 91
  • NONHSAG028040.2 91
  • NONHSAG028044.2 91
  • NONHSAG028043.2 91
  • HSALNG0015625 164
  • HSALNG0015634 164

External Ids for LINC01829 Gene

Summaries for LINC01829 Gene

GeneCards Summary for LINC01829 Gene

LINC01829 (Long Intergenic Non-Protein Coding RNA 1829) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01829 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01829 Gene

Genomics for LINC01829 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01829 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J067396 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 600.7 -1.3 -1344 5.8 PRDM10 ZNF629 IKZF1 ZNF692 POLR2A BACH1 JUND GABPA PHF21A ZSCAN4 ETAA1 LINC01829 lnc-C1D-9 C1D
GH02J067213 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 600.1 +182.9 182935 4 CTCF PHB2 ZSCAN4 EGR1 NFE2 E4F1 ZNF282 ZFHX2 RAD21 RCOR1 LOC101927661 LINC01828 LINC01829 RF00951-069 ETAA1 MEIS1
GH02J067057 Enhancer 1 Ensembl ENCODE 5.1 +340.1 340135 1.6 GATAD2A TFE3 RCOR2 RXRB IRF2 SP1 CEBPA KMT2B SOX13 TCF7 LINC01828 LINC01829 lnc-ETAA1-15 lnc-C1D-14 lnc-ETAA1-16 ETAA1 MEIS1
GH02J067450 Enhancer 0.9 Ensembl ENCODE 5.1 -54.2 -54222 3.3 CREB1 ATF7 ZNF629 CEBPB JUN ZBTB48 JUND ZNF623 NFIC EP300 ETAA1 LINC01829 HSALNG0015625 LOC107985891 C1D
GH02J067037 Enhancer 0.9 Ensembl ENCODE 4.9 +359.9 359891 0.7 GATAD2A SP1 ZNF561 SOX13 ESR1 FOXA2 OSR2 YY1 FOXP1 TBX3 LINC01829 ENSG00000223859 LOC105374785 lnc-C1D-14 lnc-ETAA1-16 ETAA1 MEIS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01829 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01829 Gene

Genomic Locations for LINC01829 Gene
chr2:67,123,357-67,398,136
(GRCh38/hg38)
Size:
274,780 bases
Orientation:
Minus strand
chr2:67,350,489-67,442,451
(GRCh37/hg19)
Size:
91,963 bases
Orientation:
Minus strand

Genomic View for LINC01829 Gene

Genes around LINC01829 on UCSC Golden Path with GeneCards custom track
LINC01829 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01829 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01829 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01829 Gene

Proteins for LINC01829 Gene

Post-translational modifications for LINC01829 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01829 Gene

Domains & Families for LINC01829 Gene

Gene Families for LINC01829 Gene

genes like me logo Genes that share domains with LINC01829: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01829 Gene

Function for LINC01829 Gene

Phenotypes From GWAS Catalog for LINC01829 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01829 Gene

Localization for LINC01829 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01829 Gene

Pathways & Interactions for LINC01829 Gene

PathCards logo

SuperPathways for LINC01829 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01829 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01829 Gene

Drugs & Compounds for LINC01829 Gene

No Compound Related Data Available

Transcripts for LINC01829 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01829 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002BE7F9_9606 lncRNA 2100 6

HGNC: 52635,

RefSeq: NR_038844,

Ensembl: ENST00000433133 (view in UCSC) ,

LncBook: HSALNT0033135,

LNCipedia: LINC01829:38,

NONCODE: NONHSAT071264.2,

URS00004A29B8_9606 lncRNA 750 4

Ensembl: ENST00000447453 (view in UCSC) ,

LncBook: HSALNT0033140,

LNCipedia: LINC01829:47,

NONCODE: NONHSAT071265.2,

URS000050888E_9606 lncRNA 571 3

Ensembl: ENST00000414404 (view in UCSC) ,

LNCipedia: LINC01829:44,

NONCODE: NONHSAT071269.2,

URS0000EF321F_9606 lncRNA 1280 1

Ensembl: ENST00000652561 (view in UCSC) ,

URS0000EEE640_9606 lncRNA 1230 1

Ensembl: ENST00000657304 (view in UCSC) ,

LINC01829 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01829 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01829 Gene

No ASD Table

Relevant External Links for LINC01829 Gene

GeneLoc Exon Structure for
LINC01829

Expression for LINC01829 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01829

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01829 Gene

Orthologs for LINC01829 Gene

Evolution for LINC01829 Gene

ENSEMBL:
Gene Tree for LINC01829 (if available)
TreeFam:
Gene Tree for LINC01829 (if available)

No data available for Orthologs for LINC01829 Gene

Paralogs for LINC01829 Gene

No data available for Paralogs for LINC01829 Gene

Variants for LINC01829 Gene

Additional dbSNP identifiers (rs#s) for LINC01829 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01829 Gene

Variant ID Type Subtype PubMed ID
esv2759058 CNV gain+loss 17122850
esv2762260 CNV loss 21179565
esv3591143 CNV loss 21293372
nsv1001672 CNV gain 25217958
nsv1002668 CNV loss 25217958
nsv1008421 CNV gain 25217958
nsv1116382 CNV deletion 24896259
nsv428397 CNV gain 18775914
nsv818006 CNV gain 17921354
nsv953136 CNV deletion 24416366

Additional Variant Information for LINC01829 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01829

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01829 Gene

Disorders for LINC01829 Gene

No disorders were found for LINC01829 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01829 Gene

Publications for LINC01829 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01829 Gene

Sources for LINC01829 Gene