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Aliases for LINC01828 Gene
Subcategory (RNA class) for LINC01828 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC01828 Gene
External Ids for LINC01828 Gene
- HGNC: 52634
- Entrez Gene: 102800447
- Ensembl: ENSG00000235885
Previous GeneCards Identifiers for LINC01828 Gene
- GC02P067089
Summaries for LINC01828 Gene
GeneCards Summary for LINC01828 Gene
LINC01828 (Long Intergenic Non-Protein Coding RNA 1828) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01828 include Polycystic Ovary Syndrome.
Additional gene information for LINC01828 Gene
- Monarch Initiative
- Search for LINC01828 at DataMed
- Search for LINC01828 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01828 Gene
Genomics for LINC01828 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01828 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01828 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01828 Gene
Genomic Locations for LINC01828 Gene
- chr2:67,056,157-67,311,439
- (GRCh38/hg38)
- Size:
- 255,283 bases
- Orientation:
- Plus strand
Genomic View for LINC01828 Gene
Genes around LINC01828 on UCSC Golden Path with GeneCards custom track
LINC01828 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2p14 by HGNC
- 2p14 by Entrez Gene
- 2p14 by Ensembl
LINC01828 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01828 Gene
Proteins for LINC01828 Gene
Post-translational modifications for LINC01828 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01828
- Origene Custom Protein Services for LINC01828
No data available for DME Specific Peptides for LINC01828 Gene
Domains & Families for LINC01828 Gene
Gene Families for LINC01828 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01828 Gene
Function for LINC01828 Gene
Phenotypes From GWAS Catalog for LINC01828 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01828
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01828 Gene
Localization for LINC01828 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01828 Gene
Transcripts for LINC01828 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01828 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000502891_9606 | lncRNA | 531 | 5 |
RefSeq: NR_110568, Ensembl: ENST00000445514 (view in UCSC) , LncBook: HSALNT0033160, LNCipedia: LINC01828:28, NONCODE: NONHSAT071272.2, |
| URS0000811E7B_9606 | lncRNA | 1404 | 4 |
Ensembl: ENST00000628692 (view in UCSC) , LncBook: HSALNT0033173, LNCipedia: LINC01828:34, NONCODE: NONHSAT181950.1, |
| URS00002A91F4_9606 | lncRNA | 863 | 4 |
Ensembl: ENST00000594329 (view in UCSC) , LncBook: HSALNT0033130, LNCipedia: LINC01828:27, NONCODE: NONHSAT071262.2, |
| URS0000811786_9606 | lncRNA | 848 | 4 |
Ensembl: ENST00000626583 (view in UCSC) , LncBook: HSALNT0033181, LNCipedia: LINC01828:36, NONCODE: NONHSAT181952.1, |
| URS00002D7199_9606 | lncRNA | 750 | 4 |
Ensembl: ENST00000593336 (view in UCSC) , LncBook: HSALNT0033172, LNCipedia: LINC01828:33, NONCODE: NONHSAT071275.2, |
LINC01828 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01828 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01828
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC01828 Gene
- GeneLoc Exon Structure for
- LINC01828
Expression for LINC01828 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01828
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01828 Gene
Orthologs for LINC01828 Gene
No data available for Orthologs for LINC01828 Gene
Paralogs for LINC01828 Gene
No data available for Paralogs for LINC01828 Gene
Variants for LINC01828 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv220n21 | CNV | loss | 19592680 |
| esv2661242 | CNV | deletion | 23128226 |
| esv2665861 | CNV | deletion | 23128226 |
| esv2668856 | CNV | deletion | 23128226 |
| esv2671011 | CNV | deletion | 23128226 |
| esv2720166 | CNV | deletion | 23290073 |
| esv2759058 | CNV | gain+loss | 17122850 |
| esv2762260 | CNV | loss | 21179565 |
| esv34381 | CNV | loss | 17911159 |
| esv3591140 | CNV | loss | 21293372 |
| esv3591141 | CNV | loss | 21293372 |
| esv3591142 | CNV | loss | 21293372 |
| esv3591143 | CNV | loss | 21293372 |
| esv3591146 | CNV | loss | 21293372 |
| nsv1001672 | CNV | gain | 25217958 |
| nsv1002668 | CNV | loss | 25217958 |
| nsv1008421 | CNV | gain | 25217958 |
| nsv1116382 | CNV | deletion | 24896259 |
| nsv2763 | CNV | insertion | 18451855 |
| nsv428397 | CNV | gain | 18775914 |
| nsv818006 | CNV | gain | 17921354 |
| nsv829449 | CNV | loss | 20364138 |
| nsv829450 | CNV | loss | 20364138 |
| nsv834249 | CNV | loss | 17160897 |
| nsv953136 | CNV | deletion | 24416366 |
| nsv9991 | CNV | loss | 18304495 |
Additional Variant Information for LINC01828 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01828
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01828 Gene
Disorders for LINC01828 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| polycystic ovary syndrome |
|
Search LINC01828 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC01828
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01828 Gene
Publications for LINC01828 Gene
- Long non-coding RNA AC023115.3 suppresses chemoresistance of glioblastoma by reducing autophagy. (PMID: 28499919) Ma B … Zhang B (Biochimica et biophysica acta. Molecular cell research 2017) 3
Products for LINC01828 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01828
- Origene Custom Protein Services for LINC01828
- Browse OriGene Inhibitory RNA Products For LINC01828
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01828
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01828
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01828
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01828
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01828
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01828
Sources for LINC01828 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB