Aliases for LINC01828 Gene

Subcategory (RNA class) for LINC01828 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01828 Gene

  • Long Intergenic Non-Protein Coding RNA 1828 2 3 5
  • LINC01828 2 5 165
  • NONHSAG028034.2 91
  • HSALNG0015623 164

External Ids for LINC01828 Gene

Previous GeneCards Identifiers for LINC01828 Gene

  • GC02P067089

Summaries for LINC01828 Gene

GeneCards Summary for LINC01828 Gene

LINC01828 (Long Intergenic Non-Protein Coding RNA 1828) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01828 include Polycystic Ovary Syndrome.

Additional gene information for LINC01828 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01828 Gene

Genomics for LINC01828 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01828 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J067213 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 600.1 +159.0 159044 4 CTCF PHB2 ZSCAN4 EGR1 NFE2 E4F1 ZNF282 ZFHX2 RAD21 RCOR1 LOC101927661 LINC01828 LINC01829 RF00951-069 ETAA1 MEIS1
GH02J067255 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE 600.1 +202.8 202752 6.8 FOXA1 POLR2A SP1 CEBPB BRCA1 JUN RCOR1 FOS CREB1 ELK4 LINC01828 ETAA1 LOC101927661 RF00951-069 LINC01829 MEIS1
GH02J067054 Enhancer 1.2 VISTA UCNEbase Ensembl 600.7 -1.4 -1390 1.3 SOX13 ESR1 FOXA2 STAT1 SOX5 ZNF644 PKNOX1 LINC01828 ENSG00000223859 lnc-C1D-14 lnc-ETAA1-16 ETAA1 MEIS1
GH02J067057 Enhancer 1 Ensembl ENCODE 600.7 +1.8 1844 1.6 GATAD2A TFE3 RCOR2 RXRB IRF2 SP1 CEBPA KMT2B SOX13 TCF7 LINC01828 LINC01829 lnc-ETAA1-15 lnc-C1D-14 lnc-ETAA1-16 ETAA1 MEIS1
GH02J067055 Enhancer 0.4 Ensembl 600.7 -0.5 -457 0.2 CEBPB FOS YY1 HLF LINC01828 lnc-C1D-14 ENSG00000223859 lnc-ETAA1-16 ETAA1 MEIS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01828 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01828 Gene

Genomic Locations for LINC01828 Gene
chr2:67,056,157-67,311,439
(GRCh38/hg38)
Size:
255,283 bases
Orientation:
Plus strand

Genomic View for LINC01828 Gene

Genes around LINC01828 on UCSC Golden Path with GeneCards custom track
LINC01828 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01828 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01828 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01828 Gene

Proteins for LINC01828 Gene

Post-translational modifications for LINC01828 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01828 Gene

Domains & Families for LINC01828 Gene

Gene Families for LINC01828 Gene

genes like me logo Genes that share domains with LINC01828: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01828 Gene

Function for LINC01828 Gene

Phenotypes From GWAS Catalog for LINC01828 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01828 Gene

Localization for LINC01828 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01828 Gene

Pathways & Interactions for LINC01828 Gene

PathCards logo

SuperPathways for LINC01828 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01828 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01828 Gene

Drugs & Compounds for LINC01828 Gene

No Compound Related Data Available

Transcripts for LINC01828 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01828 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000502891_9606 lncRNA 531 5

RefSeq: NR_110568,

Ensembl: ENST00000445514 (view in UCSC) ,

LncBook: HSALNT0033160,

LNCipedia: LINC01828:28,

NONCODE: NONHSAT071272.2,

URS0000811E7B_9606 lncRNA 1404 4

Ensembl: ENST00000628692 (view in UCSC) ,

LncBook: HSALNT0033173,

LNCipedia: LINC01828:34,

NONCODE: NONHSAT181950.1,

URS00002A91F4_9606 lncRNA 863 4

Ensembl: ENST00000594329 (view in UCSC) ,

LncBook: HSALNT0033130,

LNCipedia: LINC01828:27,

NONCODE: NONHSAT071262.2,

URS0000811786_9606 lncRNA 848 4

Ensembl: ENST00000626583 (view in UCSC) ,

LncBook: HSALNT0033181,

LNCipedia: LINC01828:36,

NONCODE: NONHSAT181952.1,

URS00002D7199_9606 lncRNA 750 4

Ensembl: ENST00000593336 (view in UCSC) ,

LncBook: HSALNT0033172,

LNCipedia: LINC01828:33,

NONCODE: NONHSAT071275.2,

LINC01828 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01828 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01828 Gene

No ASD Table

Relevant External Links for LINC01828 Gene

GeneLoc Exon Structure for
LINC01828

Expression for LINC01828 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01828

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01828 Gene

Orthologs for LINC01828 Gene

Evolution for LINC01828 Gene

ENSEMBL:
Gene Tree for LINC01828 (if available)
TreeFam:
Gene Tree for LINC01828 (if available)

No data available for Orthologs for LINC01828 Gene

Paralogs for LINC01828 Gene

No data available for Paralogs for LINC01828 Gene

Variants for LINC01828 Gene

Additional dbSNP identifiers (rs#s) for LINC01828 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01828 Gene

Variant ID Type Subtype PubMed ID
dgv220n21 CNV loss 19592680
esv2661242 CNV deletion 23128226
esv2665861 CNV deletion 23128226
esv2668856 CNV deletion 23128226
esv2671011 CNV deletion 23128226
esv2720166 CNV deletion 23290073
esv2759058 CNV gain+loss 17122850
esv2762260 CNV loss 21179565
esv34381 CNV loss 17911159
esv3591140 CNV loss 21293372
esv3591141 CNV loss 21293372
esv3591142 CNV loss 21293372
esv3591143 CNV loss 21293372
esv3591146 CNV loss 21293372
nsv1001672 CNV gain 25217958
nsv1002668 CNV loss 25217958
nsv1008421 CNV gain 25217958
nsv1116382 CNV deletion 24896259
nsv2763 CNV insertion 18451855
nsv428397 CNV gain 18775914
nsv818006 CNV gain 17921354
nsv829449 CNV loss 20364138
nsv829450 CNV loss 20364138
nsv834249 CNV loss 17160897
nsv953136 CNV deletion 24416366
nsv9991 CNV loss 18304495

Additional Variant Information for LINC01828 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01828

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01828 Gene

Disorders for LINC01828 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01828 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
polycystic ovary syndrome
  • pco
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01828: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01828 Gene

Publications for LINC01828 Gene

  1. Long non-coding RNA AC023115.3 suppresses chemoresistance of glioblastoma by reducing autophagy. (PMID: 28499919) Ma B … Zhang B (Biochimica et biophysica acta. Molecular cell research 2017) 3

Products for LINC01828 Gene

Sources for LINC01828 Gene