Aliases for LINC01823 Gene

Subcategory (RNA class) for LINC01823 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01823 Gene

  • Long Intergenic Non-Protein Coding RNA 1823 2 3 5
  • LINC01823 2 168
  • NONHSAG029139 92
  • HSALNG0018463 167

External Ids for LINC01823 Gene

Previous GeneCards Identifiers for LINC01823 Gene

  • GC02P121790

Summaries for LINC01823 Gene

GeneCards Summary for LINC01823 Gene

LINC01823 (Long Intergenic Non-Protein Coding RNA 1823) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01823 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01823 Gene

Genomics for LINC01823 Gene

GeneHancer (GH) Regulatory Elements for LINC01823 Gene

Promoters and enhancers for LINC01823 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J121775 Enhancer 1.2 FANTOM5 Ensembl ENCODE 512.6 -1.5 -1532 4 ZBTB10 FOXA1 TOE1 TEAD1 MCM3 ZNF282 FOXA2 FOSL1 USF1 ZSCAN18 LINC01823 RPL12P15 HSALNG0018462 LOC105373590 lnc-NIFK-8
GH02J121789 Enhancer 1.1 Ensembl ENCODE dbSUPER 28.4 +11.9 11876 3.2 JUND TEAD4 FOS CUX1 ZNF341 PCBP1 CREB1 ZBTB17 FOSL2 JUN LOC105373590 LINC01823 piR-48369-088
GH02J121735 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 9.8 -42.0 -42027 3.9 ZBTB40 ZNF217 SIN3A TCF12 NRF1 MYC POLR2G USF1 SP1 PHF8 NIFK TSN LINC01823 FJ601684-251
GH02J121524 Promoter/Enhancer 2.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.2 -250.0 -250005 9.4 EP300 FOXK2 ZBTB40 ZNF217 CTCF SIN3A NRF1 TCF12 POLR2G SP1 ENSG00000265451 RNU4ATAC NIFK TSN LINC01823 CLASP1 lnc-TSN-10
GH02J121772 Enhancer 0.8 Ensembl ENCODE 17.7 -6.4 -6432 2.2 TCF7 MXI1 NR2F2 REST SAP130 POLR2A SPI1 RCOR1 SMARCA4 TFAP4 LINC01823 lnc-NIFK-8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01823 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01823 Gene

Genomic Locations for LINC01823 Gene
chr2:121,779,133-121,809,962
(GRCh38/hg38)
Size:
30,830 bases
Orientation:
Plus strand
chr2:122,548,020-122,554,278
(GRCh37/hg19)
Size:
6,259 bases
Orientation:
Plus strand

Genomic View for LINC01823 Gene

Genes around LINC01823 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01823 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01823 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01823 Gene

Proteins for LINC01823 Gene

Post-translational modifications for LINC01823 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01823 Gene

Domains & Families for LINC01823 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01823 Gene

Function for LINC01823 Gene

Phenotypes From GWAS Catalog for LINC01823 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01823 Gene

Localization for LINC01823 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01823 Gene

Pathways & Interactions for LINC01823 Gene

PathCards logo

SuperPathways for LINC01823 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01823 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01823 Gene

Drugs & Compounds for LINC01823 Gene

No Compound Related Data Available

Transcripts for LINC01823 Gene

mRNA/cDNA for LINC01823 Gene

21 RNACentral transcripts :
17 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
4 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01823 Gene

No ASD Table

Relevant External Links for LINC01823 Gene

GeneLoc Exon Structure for
LINC01823

Expression for LINC01823 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01823 Gene

Orthologs for LINC01823 Gene

Evolution for LINC01823 Gene

ENSEMBL:
Gene Tree for LINC01823 (if available)
TreeFam:
Gene Tree for LINC01823 (if available)

No data available for Orthologs for LINC01823 Gene

Paralogs for LINC01823 Gene

No data available for Paralogs for LINC01823 Gene

Variants for LINC01823 Gene

Additional dbSNP identifiers (rs#s) for LINC01823 Gene

Additional Variant Information for LINC01823 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01823

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01823 Gene

Disorders for LINC01823 Gene

No disorders were found for LINC01823 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01823 Gene

Publications for LINC01823 Gene

No publications were found for LINC01823 Gene.

No data available for Mastermind for LINC01823 Gene

Products for LINC01823 Gene

Sources for LINC01823 Gene