Aliases for LINC01812 Gene

Subcategory (RNA class) for LINC01812 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01812 Gene

  • Long Intergenic Non-Protein Coding RNA 1812 2 3 5
  • LINC01812 2 170
  • HSALNG0015625 169
  • NONHSAG028056 94

External Ids for LINC01812 Gene

Previous GeneCards Identifiers for LINC01812 Gene

  • GC02M067797

Summaries for LINC01812 Gene

GeneCards Summary for LINC01812 Gene

LINC01812 (Long Intergenic Non-Protein Coding RNA 1812) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01812 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01812 Gene

Genomics for LINC01812 Gene

GeneHancer (GH) Regulatory Elements for LINC01812 Gene

Promoters and enhancers for LINC01812 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J067825 Enhancer 0.6 Ensembl ENCODE 750.6 +0.2 226 2.4 JUND FOS JUN MAFK LINC01812 piR-39138-013
GH02J067792 Enhancer 0.5 UCNEbase ENCODE 0.3 +32.6 32597 0.3 piR-39138-013 LINC01812 ENSG00000235495
GH02J067790 Enhancer 0.4 Ensembl ENCODE 0.3 +34.7 34740 1 FOS piR-39138-013 LINC01812 ENSG00000235495
GH02J067648 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas 0.1 +175.2 175226 2.8 CTCF POLR2A HLF CEBPB RAD21 NFIB CEBPG CREB1 PKNOX1 CEBPA lnc-ETAA1-14 ENSG00000286002 lnc-C1D-7 ENSG00000235495 LINC01812
GH02J067797 Enhancer 0.4 Ensembl 0.3 +27.2 27207 1.6 LCORL NFIB NFIC piR-39138-013 LINC01812 ENSG00000235495
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01812 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01812 Gene

Genomic Locations for LINC01812 Gene
chr2:67,528,075-67,825,616
(GRCh38/hg38)
Size:
297,542 bases
Orientation:
Minus strand
chr2:68,023,186-68,052,694
(GRCh37/hg19)
Size:
29,509 bases
Orientation:
Minus strand

Genomic View for LINC01812 Gene

Genes around LINC01812 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01812 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01812 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01812 Gene

Proteins for LINC01812 Gene

Post-translational modifications for LINC01812 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01812 Gene

Domains & Families for LINC01812 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01812 Gene

Function for LINC01812 Gene

Phenotypes From GWAS Catalog for LINC01812 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01812 Gene

Localization for LINC01812 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01812 Gene

Pathways & Interactions for LINC01812 Gene

PathCards logo

SuperPathways for LINC01812 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01812 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01812 Gene

Drugs & Compounds for LINC01812 Gene

No Compound Related Data Available

Transcripts for LINC01812 Gene

mRNA/cDNA for LINC01812 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(6) LncBook transcripts :
(3) NONCODE transcripts :
(7) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01812 Gene

No ASD Table

Relevant External Links for LINC01812 Gene

GeneLoc Exon Structure for
LINC01812
ECgene alternative splicing isoforms for
LINC01812

Expression for LINC01812 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01812 Gene

Orthologs for LINC01812 Gene

Evolution for LINC01812 Gene

ENSEMBL:
Gene Tree for LINC01812 (if available)
TreeFam:
Gene Tree for LINC01812 (if available)

No data available for Orthologs for LINC01812 Gene

Paralogs for LINC01812 Gene

No data available for Paralogs for LINC01812 Gene

Variants for LINC01812 Gene

Sequence variations from dbSNP and Humsavar for LINC01812 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000038751 -- 67,798,877(-) C/A/T intron_variant
rs1000116179 -- 67,824,517(-) T/C intron_variant
rs1000237575 -- 67,808,710(-) A/G intron_variant
rs1000256138 -- 67,803,762(-) G/A intron_variant
rs1000314232 -- 67,808,454(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01812 Gene

Variant ID Type Subtype PubMed ID
esv1555439 CNV insertion 17803354
esv2504614 CNV deletion 19546169
esv3306251 CNV mobile element insertion 20981092
esv3324706 CNV insertion 20981092
esv3892592 CNV loss 25118596
nsv2765 CNV insertion 18451855
nsv834250 CNV gain 17160897
nsv999943 CNV gain 25217958

Additional Variant Information for LINC01812 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01812

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01812 Gene

Disorders for LINC01812 Gene

Additional Disease Information for LINC01812

No disorders were found for LINC01812 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01812 Gene

Publications for LINC01812 Gene

No publications were found for LINC01812 Gene.

No data available for External Links for LINC01812 Gene

Products for LINC01812 Gene

Sources for LINC01812 Gene