Aliases for LINC01808 Gene

Subcategory (RNA class) for LINC01808 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01808 Gene

  • Long Intergenic Non-Protein Coding RNA 1808 2 3 5
  • LINC01808 2 168
  • NONHSAG027135 92
  • HSALNG0013365 167

External Ids for LINC01808 Gene

Summaries for LINC01808 Gene

GeneCards Summary for LINC01808 Gene

LINC01808 (Long Intergenic Non-Protein Coding RNA 1808) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01808 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01808 Gene

Genomics for LINC01808 Gene

GeneHancer (GH) Regulatory Elements for LINC01808 Gene

Promoters and enhancers for LINC01808 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J019474 Enhancer 0.7 Ensembl ENCODE 0.7 +4.6 4604 2.4 NFYB SPI1 GABPA ELF1 FOXP2 POLR2A MYC BHLHE40 MAX MLLT1 LINC01808 lnc-RHOB-20
GH02J019487 Enhancer 1 Ensembl ENCODE 0.4 +19.4 19404 1.6 TCF12 TCF7 EP300 SKI TEAD1 ZSCAN9 FOXA2 CEBPB MAFF FOS LINC01808 lnc-RHOB-20
GH02J019503 Enhancer 1 Ensembl dbSUPER 0.3 +35.7 35704 0.6 TCF12 POLR2G NCOR1 ZIC2 TCF7 FOXA1 TRIM28 TGIF2 TEAD1 ZBTB26 LINC01808 lnc-RHOB-20
GH02J019537 Enhancer 1.5 VISTA UCNEbase Ensembl ENCODE 0.2 +72.1 72103 6.6 TCF12 JUND FOS POLR2A TRIM28 CUX1 EP300 ZBTB26 CTCF DEK lnc-RHOB-20 LINC01808
GH02J019490 Enhancer 0.4 Ensembl ENCODE 0.4 +22.1 22144 0.9 REST LINC01808 lnc-RHOB-20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01808 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01808 Gene

Genomic Locations for LINC01808 Gene
chr2:19,468,997-19,520,095
(GRCh38/hg38)
Size:
51,099 bases
Orientation:
Plus strand
chr2:19,675,211-19,688,611
(GRCh37/hg19)
Size:
13,401 bases
Orientation:
Plus strand

Genomic View for LINC01808 Gene

Genes around LINC01808 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01808 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01808 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01808 Gene

Proteins for LINC01808 Gene

Post-translational modifications for LINC01808 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01808 Gene

Domains & Families for LINC01808 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01808 Gene

Function for LINC01808 Gene

Phenotypes From GWAS Catalog for LINC01808 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01808 Gene

Localization for LINC01808 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01808 Gene

Pathways & Interactions for LINC01808 Gene

PathCards logo

SuperPathways for LINC01808 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01808 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01808 Gene

Drugs & Compounds for LINC01808 Gene

No Compound Related Data Available

Transcripts for LINC01808 Gene

mRNA/cDNA for LINC01808 Gene

17 RNACentral transcripts :
1 NCBI additional mRNA sequence :
10 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
7 NONCODE transcripts :
8 LncBook transcripts :
8 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01808 Gene

No ASD Table

Relevant External Links for LINC01808 Gene

GeneLoc Exon Structure for
LINC01808

Expression for LINC01808 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01808

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01808 Gene

Orthologs for LINC01808 Gene

Evolution for LINC01808 Gene

ENSEMBL:
Gene Tree for LINC01808 (if available)
TreeFam:
Gene Tree for LINC01808 (if available)

No data available for Orthologs for LINC01808 Gene

Paralogs for LINC01808 Gene

No data available for Paralogs for LINC01808 Gene

Variants for LINC01808 Gene

Additional dbSNP identifiers (rs#s) for LINC01808 Gene

Additional Variant Information for LINC01808 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01808

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01808 Gene

Disorders for LINC01808 Gene

Additional Disease Information for LINC01808

No disorders were found for LINC01808 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01808 Gene

Publications for LINC01808 Gene

No publications were found for LINC01808 Gene.

No data available for Mastermind for LINC01808 Gene

Products for LINC01808 Gene

Sources for LINC01808 Gene