Aliases for LINC01807 Gene

Data sources for LINC01807 Gene:

RNA type for LINC01807 Gene

lncRNA

Aliases for LINC01807 Gene

External Ids for LINC01807 Gene

Summaries for LINC01807 Gene

GeneCards Summary for LINC01807 Gene

LINC01807 (Long Intergenic Non-Protein Coding RNA 1807) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01807 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01807 Gene

Genomics for LINC01807 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01807 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J228611 Promoter 0.3 EPDnew 250.1 +230.6 230570 0.1 LINC01807 piR-36746-015 RF00017-3102 SPHKAP PID1
GH02J228826 Enhancer 0.4 Ensembl ENCODE 0.4 +14.4 14445 2.1 CREB1 LINC01807 HSALNG0022800-002 PID1 SPHKAP
GH02J228869 Enhancer 0.3 Ensembl 0.3 -27.9 -27930 0.6 HNF4A RAD21 HSALNG0022805 LINC01807 PID1 SPHKAP
GH02J228875 Enhancer 0.3 Ensembl 0.3 -33.5 -33507 0.9 EBF1 HSALNG0022805 LINC01807 PID1 SPHKAP
GH02J228771 Enhancer 0.4 Ensembl ENCODE 0.2 +70.2 70180 1.2 SP1 HSALNG0022800-002 RPL7L1P10 HSALNG0022800-001 LINC01807 PID1 SPHKAP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01807 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01807 Gene

Latest Assembly
chr2:228,475,224-228,841,970
(GRCh38/hg38)
Size:
366,747 bases
Orientation:
Minus strand

Previous Assembly
chr2:229,347,975-229,476,111
(GRCh37/hg19 by Entrez Gene)
Size:
128,137 bases
Orientation:
Minus strand

chr2:229,347,977-229,476,111
(GRCh37/hg19 by Ensembl)
Size:
128,135 bases
Orientation:
Minus strand

Genomic View for LINC01807 Gene

Genes around LINC01807 on UCSC Golden Path with GeneCards custom track
LINC01807 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01807 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01807 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01807 Gene

Proteins for LINC01807 Gene

Post-translational modifications for LINC01807 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01807 Gene

Domains & Families for LINC01807 Gene

Gene Families for LINC01807 Gene

genes like me logo Genes that share domains with LINC01807: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01807 Gene

Function for LINC01807 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01807 Gene

Localization for LINC01807 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01807 Gene

Pathways & Interactions for LINC01807 Gene

PathCards logo

SuperPathways for LINC01807 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01807 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01807 Gene

Drugs & Compounds for LINC01807 Gene

No Compound Related Data Available

Transcripts for LINC01807 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01807 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000055294E_9606 lncRNA 680 3

Ensembl: ENST00000432481 (view in UCSC) ,

LNCipedia: LINC01807:3,

NONCODE: NONHSAT077236.2,

URS0000EEBCC1_9606 lncRNA 950 1

Ensembl: ENST00000665053 (view in UCSC) ,

URS0000EEBA95_9606 lncRNA 718 1

Ensembl: ENST00000667233 (view in UCSC) ,

URS0000EF579A_9606 lncRNA 689 1

Ensembl: ENST00000656071 (view in UCSC) ,

URS0000CCE0B1_9606 lncRNA 674 1

RefSeq: NR_151716,

LINC01807 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01807 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01807 Gene

No ASD Table

Relevant External Links for LINC01807 Gene

GeneLoc Exon Structure for
LINC01807

Expression for LINC01807 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01807 Gene

Orthologs for LINC01807 Gene

Evolution for LINC01807 Gene

ENSEMBL:
Gene Tree for LINC01807 (if available)
TreeFam:
Gene Tree for LINC01807 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01807

No data available for Orthologs for LINC01807 Gene

Paralogs for LINC01807 Gene

No data available for Paralogs for LINC01807 Gene

Variants for LINC01807 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01807 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01807 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01807
Leiden Open Variation Database (LOVD)
LINC01807

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01807 Gene

Disorders for LINC01807 Gene

Additional Disease Information for LINC01807

No disorders were found for LINC01807 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01807 Gene

Publications for LINC01807 Gene

  1. Genome-wide association study of endometrial cancer in E2C2. (PMID: 24096698) De Vivo I … Kraft P (Human genetics 2014) 3
  2. Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. (PMID: 23284291) Hancock DB … London SJ (PLoS genetics 2012) 3

No data available for Mastermind for LINC01807 Gene

Products for LINC01807 Gene

Sources for LINC01807 Gene