Aliases for LINC01806 Gene

Subcategory (RNA class) for LINC01806 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01806 Gene

  • Long Intergenic Non-Protein Coding RNA 1806 2 3 5
  • LINC01806 2 168
  • NONHSAG029668 92
  • HSALNG0019994 167

External Ids for LINC01806 Gene

Summaries for LINC01806 Gene

GeneCards Summary for LINC01806 Gene

LINC01806 (Long Intergenic Non-Protein Coding RNA 1806) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01806 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01806 Gene

Genomics for LINC01806 Gene

GeneHancer (GH) Regulatory Elements for LINC01806 Gene

Promoters and enhancers for LINC01806 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J161242 Promoter/Enhancer 1.5 UCNEbase Ensembl ENCODE 547 -0.2 -171 3.4 ZBTB40 POLR2G ZFX POLR2A TRIM22 ZBTB26 TBX3 KMT2B SP2 TBP LINC01806 piR-38278 lnc-RBMS1-10 LOC101929512 ENSG00000235724
GH02J161246 Enhancer 0.6 UCNEbase 500.7 +1.6 1634 0.2 NFIC SIN3A ATF4 DACH1 GATA1 LINC01806 piR-38278 LOC101929512 ENSG00000235724
GH02J161133 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 33.2 -107.2 -107191 7.3 ZBTB40 TCF12 RELA TRIM22 POLR2A TEAD1 ZSCAN9 FOXA2 ZNF316 CBFB TANK LINC01806 ENSG00000224467 LOC105373719
GH02J161307 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 32 +64.3 64271 3.6 ZBTB40 ZNF217 TCF12 SIN3A NRF1 USF1 POLR2G NCOR1 JUND PHF8 ENSG00000235724 PSMD14 LINC01806 lnc-DPP4-9
GH02J161158 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 29.3 -81.0 -81021 9.6 EP300 FOXK2 ZBTB40 ZNF217 TCF12 SIN3A NRF1 POLR2G SP1 NCOR1 TANK LINC01806 ENSG00000226121 RBMS1 ENSG00000235724 ENSG00000224467 HSALNG0019989 LOC105373719 piR-31199-182
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01806 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01806 Gene

Genomic Locations for LINC01806 Gene
chr2:161,244,730-161,255,442
(GRCh38/hg38)
Size:
10,713 bases
Orientation:
Plus strand

Genomic View for LINC01806 Gene

Genes around LINC01806 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01806 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01806 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01806 Gene

Proteins for LINC01806 Gene

Post-translational modifications for LINC01806 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01806 Gene

Domains & Families for LINC01806 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01806 Gene

Function for LINC01806 Gene

Phenotypes From GWAS Catalog for LINC01806 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01806 Gene

Localization for LINC01806 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01806 Gene

Pathways & Interactions for LINC01806 Gene

PathCards logo

SuperPathways for LINC01806 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01806 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01806 Gene

Drugs & Compounds for LINC01806 Gene

No Compound Related Data Available

Transcripts for LINC01806 Gene

mRNA/cDNA for LINC01806 Gene

17 RNACentral transcripts :
2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
3 LncBook transcripts :
13 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01806 Gene

No ASD Table

Relevant External Links for LINC01806 Gene

GeneLoc Exon Structure for
LINC01806

Expression for LINC01806 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01806

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01806 Gene

Orthologs for LINC01806 Gene

Evolution for LINC01806 Gene

ENSEMBL:
Gene Tree for LINC01806 (if available)
TreeFam:
Gene Tree for LINC01806 (if available)

No data available for Orthologs for LINC01806 Gene

Paralogs for LINC01806 Gene

No data available for Paralogs for LINC01806 Gene

Variants for LINC01806 Gene

Additional dbSNP identifiers (rs#s) for LINC01806 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01806 Gene

Variant ID Type Subtype PubMed ID
dgv7140n54 CNV loss 21841781
nsv459934 CNV loss 19166990
nsv583500 CNV loss 21841781
nsv834437 CNV gain 17160897
nsv955277 CNV duplication 24416366

Additional Variant Information for LINC01806 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01806

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01806 Gene

Disorders for LINC01806 Gene

Additional Disease Information for LINC01806

No disorders were found for LINC01806 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01806 Gene

Publications for LINC01806 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LINC01806 Gene

Products for LINC01806 Gene

Sources for LINC01806 Gene