Aliases for LINC01806 Gene

Subcategory (RNA class) for LINC01806 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01806 Gene

  • Long Intergenic Non-Protein Coding RNA 1806 2 3 5
  • LINC01806 2 170
  • HSALNG0019994 169
  • NONHSAG029668 94

External Ids for LINC01806 Gene

Summaries for LINC01806 Gene

GeneCards Summary for LINC01806 Gene

LINC01806 (Long Intergenic Non-Protein Coding RNA 1806) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01806 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01806 Gene

Genomics for LINC01806 Gene

GeneHancer (GH) Regulatory Elements for LINC01806 Gene

Promoters and enhancers for LINC01806 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J161242 Promoter/Enhancer 1.4 UCNEbase Ensembl ENCODE 796.9 -0.2 -171 3.4 ZNF24 LCORL POLR2A ZBTB33 NKRF ZNF687 KAT8 IKZF1 TRIM22 IKZF2 LINC01806 piR-38278 lnc-RBMS1-10 LOC101929512 ENSG00000235724
GH02J161246 Enhancer 0.5 UCNEbase 750.6 +1.6 1634 0.2 DACH1 NFIC LINC01806 piR-38278 LOC101929512 ENSG00000235724
GH02J161133 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 33.2 -107.2 -107191 7.3 FOXA1 ELF1 RELA HLF NKRF ELF3 POLR2A MAFK MLLT1 ZNF687 TANK LINC01806 ENSG00000224467 LOC105373719
GH02J161307 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 32 +64.3 64271 3.6 ZNF24 ZBTB40 ZBTB6 LCORL RBPJ SMARCE1 POLR2A ATF1 CREB1 HCFC1 ENSG00000235724 PSMD14 LINC01806 ENSG00000226121 RBMS1 TANK lnc-DPP4-9
GH02J161158 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 29.3 -81.0 -81021 9.6 SIN3A ZNF24 SP1 ZBTB40 FOXA1 MLX SMARCE1 RBPJ POLR2A NR2F1 TANK LINC01806 ENSG00000226121 RBMS1 ENSG00000235724 ENSG00000224467 HSALNG0019989 LOC105373719 piR-31199-182
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01806 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01806 Gene

Genomic Locations for LINC01806 Gene
chr2:161,244,730-161,255,442
(GRCh38/hg38)
Size:
10,713 bases
Orientation:
Plus strand

Genomic View for LINC01806 Gene

Genes around LINC01806 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01806 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01806 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01806 Gene

Proteins for LINC01806 Gene

Post-translational modifications for LINC01806 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01806 Gene

Domains & Families for LINC01806 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01806 Gene

Function for LINC01806 Gene

Phenotypes From GWAS Catalog for LINC01806 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01806 Gene

Localization for LINC01806 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01806 Gene

Pathways & Interactions for LINC01806 Gene

PathCards logo

SuperPathways for LINC01806 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01806 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01806 Gene

Drugs & Compounds for LINC01806 Gene

No Compound Related Data Available

Transcripts for LINC01806 Gene

mRNA/cDNA for LINC01806 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(15) RNACentral transcripts :
(5) NONCODE transcripts :
(13) LNCipedia transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01806 Gene

No ASD Table

Relevant External Links for LINC01806 Gene

GeneLoc Exon Structure for
LINC01806
ECgene alternative splicing isoforms for
LINC01806

Expression for LINC01806 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01806 Gene

Orthologs for LINC01806 Gene

Evolution for LINC01806 Gene

ENSEMBL:
Gene Tree for LINC01806 (if available)
TreeFam:
Gene Tree for LINC01806 (if available)

No data available for Orthologs for LINC01806 Gene

Paralogs for LINC01806 Gene

No data available for Paralogs for LINC01806 Gene

Variants for LINC01806 Gene

Sequence variations from dbSNP and Humsavar for LINC01806 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000867802 -- 161,248,480(+) T/C non_coding_transcript_variant
rs1000897152 -- 161,248,869(+) C/A non_coding_transcript_variant
rs1001044174 -- 161,248,987(+) T/G non_coding_transcript_variant
rs1001073670 -- 161,248,646(+) T/C non_coding_transcript_variant
rs1001204860 -- 161,246,977(+) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01806 Gene

Variant ID Type Subtype PubMed ID
dgv7140n54 CNV loss 21841781
nsv459934 CNV loss 19166990
nsv583500 CNV loss 21841781
nsv834437 CNV gain 17160897
nsv955277 CNV duplication 24416366

Additional Variant Information for LINC01806 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01806

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01806 Gene

Disorders for LINC01806 Gene

Additional Disease Information for LINC01806

No disorders were found for LINC01806 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01806 Gene

Publications for LINC01806 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for LINC01806 Gene

Products for LINC01806 Gene

Sources for LINC01806 Gene