LINC01805 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1805

GC02P064487
GIFtS:
6

Aliases for LINC01805 Gene

Subcategory (RNA class) for LINC01805 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC01805 Gene

  • Long Intergenic Non-Protein Coding RNA 1805 2 3 5
  • LINC01805 2 168
  • NONHSAG027966 92

External Ids for LINC01805 Gene

Summaries for LINC01805 Gene

GeneCards Summary for LINC01805 Gene

LINC01805 (Long Intergenic Non-Protein Coding RNA 1805) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01805 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01805 Gene

Genomics for LINC01805 Gene

GeneHancer (GH) Regulatory Elements for LINC01805 Gene

Promoters and enhancers for LINC01805 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J064482 Enhancer 0.8 Ensembl ENCODE 500.7 -1.6 -1634 1.3 TRIM28 MXI1 OSR2 ZBTB17 MAFF ZKSCAN1 MAFK ELF1 GATA3 FOS LINC01805 AFTPH LGALSL LGALSL-DT ENSG00000237217 lnc-LGALSL-4
GH02J064485 Enhancer 0.9 Ensembl ENCODE 0.7 +2.8 2827 4.6 CTCF REST TGIF2 RAD21 TRIM22 SMC3 RBM25 NFIC GATA3 ZNF654 AFTPH LINC01805 piR-61028-323
GH02J064470 Enhancer 0.8 Ensembl ENCODE 0.4 -14.0 -13973 10.6 TEAD4 RBM25 CTCF SPI1 ZNF610 GATA3 GATA2 ZNF664 RAD21 POLR2A AFTPH ENSG00000237217 SERTAD2 LINC01805 lnc-LGALSL-4
GH02J064493 Enhancer 0.6 Ensembl 0.4 +9.1 9127 0.4 USF1 USF2 TOE1 MAX CEBPG MITF ATF4 CEBPB NFYC RAD51 AFTPH LINC01805 piR-61028-323
GH02J064462 Enhancer 0.6 Ensembl ENCODE 0.4 -22.2 -22173 3.8 FOS GATA3 PRDM6 RUNX3 SCRT2 LGALSL-DT lnc-LGALSL-4 LGALSL LINC01805
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01805 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01805 Gene

Genomic Locations for LINC01805 Gene
chr2:64,484,674-64,501,651
(GRCh38/hg38)
Size:
16,978 bases
Orientation:
Plus strand
chr2:64,713,487-64,728,038
(GRCh37/hg19)
Size:
14,552 bases
Orientation:
Plus strand

Genomic View for LINC01805 Gene

Genes around LINC01805 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01805 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01805 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01805 Gene

Proteins for LINC01805 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01805 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01805 Gene

Domains & Families for LINC01805 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01805 Gene

Function for LINC01805 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01805 Gene

Localization for LINC01805 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01805 Gene

Pathways & Interactions for LINC01805 Gene

PathCards logo

SuperPathways for LINC01805 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01805 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01805 Gene

Drugs & Compounds for LINC01805 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01805 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01805 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01805 Gene

No ASD Table

Relevant External Links for LINC01805 Gene

GeneLoc Exon Structure for
LINC01805

Expression for LINC01805 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01805 Gene

Orthologs for LINC01805 Gene

Evolution for LINC01805 Gene

ENSEMBL:
Gene Tree for LINC01805 (if available)
TreeFam:
Gene Tree for LINC01805 (if available)

No data available for Orthologs for LINC01805 Gene

Paralogs for LINC01805 Gene

No data available for Paralogs for LINC01805 Gene

Variants for LINC01805 Gene

Additional dbSNP identifiers (rs#s) for LINC01805 Gene

Additional Variant Information for LINC01805 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01805

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01805 Gene

Disorders for LINC01805 Gene

Additional Disease Information for LINC01805

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01805 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01805 Gene

Publications for LINC01805 Gene

No publications were found for LINC01805 Gene.

No data available for Mastermind for LINC01805 Gene

Products for LINC01805 Gene

Sources for LINC01805 Gene