Aliases for LINC01805 Gene

Data sources for LINC01805 Gene:

Subcategory (RNA class) for LINC01805 Gene

lncRNA

Aliases for LINC01805 Gene

External Ids for LINC01805 Gene

Summaries for LINC01805 Gene

GeneCards Summary for LINC01805 Gene

LINC01805 (Long Intergenic Non-Protein Coding RNA 1805) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01805 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01805 Gene

Genomics for LINC01805 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01805 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J064478 Enhancer 0.3 Ensembl 250.7 -0.5 -543 0.4 MTA2 LINC01805 LGALSL-DT ENSG00000237217 LGALSL AFTPH HSALNG0015479 HSALNG0015480
GH02J064479 Enhancer 0.3 Ensembl 250.7 +0.2 157 0.6 NFE2 LINC01805 LGALSL-DT ENSG00000237217 LGALSL AFTPH HSALNG0015480
GH02J064482 Enhancer 0.8 Ensembl ENCODE 0.7 +3.5 3496 1.3 ELF1 MAFF ZKSCAN1 MAFK ZNF189 SCRT1 GLIS1 RCOR1 GATA2 MNT AFTPH LGALSL LGALSL-DT ENSG00000237217 LINC01805 HSALNG0015480
GH02J064485 Enhancer 0.8 Ensembl ENCODE 0.4 +8.6 8556 5.8 CTCF THAP11 REST TRIM22 SMC3 RAD21 TCF7L2 RBPJ MIER2 ZNF143 AFTPH ENSG00000251775 LINC01805 HSALNG0015480 LGALSL
GH02J064470 Enhancer 0.7 Ensembl ENCODE 0.4 -8.8 -8843 10.6 ZNF610 SPI1 POLR2A MAX CTCF ZNF664 ZMYM3 ID3 RAD51 RAD21 AFTPH ENSG00000237217 SERTAD2 HSALNG0015479 LINC01805 lnc-LGALSL-4 LGALSL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01805 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01805 Gene

Latest Assembly
chr2:64,479,544-64,508,937
(GRCh38/hg38)
Size:
29,394 bases
Orientation:
Plus strand

Previous Assembly
chr2:64,713,487-64,728,038
(GRCh37/hg19 by Entrez Gene)
Size:
14,552 bases
Orientation:
Plus strand

chr2:64,713,487-64,728,038
(GRCh37/hg19 by Ensembl)
Size:
14,552 bases
Orientation:
Plus strand

Genomic View for LINC01805 Gene

Genes around LINC01805 on UCSC Golden Path with GeneCards custom track
LINC01805 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01805 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01805 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01805 Gene

Proteins for LINC01805 Gene

Post-translational modifications for LINC01805 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01805 Gene

Domains & Families for LINC01805 Gene

Gene Families for LINC01805 Gene

genes like me logo Genes that share domains with LINC01805: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01805 Gene

Function for LINC01805 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01805 Gene

Localization for LINC01805 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01805 Gene

Pathways & Interactions for LINC01805 Gene

PathCards logo

SuperPathways for LINC01805 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01805 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01805 Gene

Drugs & Compounds for LINC01805 Gene

No Compound Related Data Available

Transcripts for LINC01805 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01805 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003D279B_9606 lncRNA 572 4

RefSeq: NR_147011,

Ensembl: ENST00000436433 (view in UCSC) ,

LNCipedia: LINC01805:3,

NONCODE: NONHSAT071118.2,

URS0001BF0DAE_9606 lncRNA 17354 1

LncBook: HSALNT0032701,

URS0001BF5B2F_9606 lncRNA 15487 1

LncBook: HSALNT0032700,

LINC01805 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01805 Gene

No ASD Table

Relevant External Links for LINC01805 Gene

GeneLoc Exon Structure for
LINC01805

No data available for mRNA/cDNA for LINC01805 Gene

Expression for LINC01805 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01805 Gene

Orthologs for LINC01805 Gene

Evolution for LINC01805 Gene

ENSEMBL:
Gene Tree for LINC01805 (if available)
TreeFam:
Gene Tree for LINC01805 (if available)

No data available for Orthologs for LINC01805 Gene

Paralogs for LINC01805 Gene

No data available for Paralogs for LINC01805 Gene

Variants for LINC01805 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01805 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01805 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01805

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01805 Gene

Disorders for LINC01805 Gene

Additional Disease Information for LINC01805

No disorders were found for LINC01805 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01805 Gene

Publications for LINC01805 Gene

No publications were found for LINC01805 Gene.

No data available for Mastermind for LINC01805 Gene

Products for LINC01805 Gene

Sources for LINC01805 Gene