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Aliases for LINC01801 Gene

Subcategory (RNA class) for LINC01801 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01801 Gene

  • Long Intergenic Non-Protein Coding RNA 1801 2 3 5
  • CTC-523E23.4 3

External Ids for LINC01801 Gene

Summaries for LINC01801 Gene

GeneCards Summary for LINC01801 Gene

LINC01801 (Long Intergenic Non-Protein Coding RNA 1801) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01801 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01801 Gene

Genomics for LINC01801 Gene

GeneHancer (GH) Regulatory Elements for LINC01801 Gene

Promoters and enhancers for LINC01801 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J035031 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 14.1 -197.8 -197832 2.6 MTA3 CC2D1A ZFX ZNF148 MLLT1 ZNF121 ZNF384 ZSCAN21 MCM2 ZBTB7A SCN1B LSM14A TMEM147-AS1 HAUS5 KIAA0355 KMT2B ZNF599 RBM42 PROSER3 ZNF792
GH19J034732 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.1 +98.8 98768 3.4 ZNF473 ZFX ELF3 MNT SIX5 CBFA2T2 NKRF POLR2A MLLT1 ZNF121 ZNF181 ENSG00000274104 ZNF599 TMEM147-AS1 ZNF302 HAUS5 ZNF30 LSM14A KIAA0355 ENSG00000267219
GH19J035627 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14 -796.1 -796094 2.5 ZFX SP1 ELF3 CC2D1A SIX5 NKRF POLR2A CEBPG CSDE1 ZSCAN21 RBM42 PIR55956 ZNF566 PROSER3 TMEM147-AS1 ZNF529 ZNF146 HAUS5 KMT2B ZFP82
GH19J035701 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 14 -869.7 -869658 1.4 SP1 NKRF POLR2A ZNF384 ZNF687 ZSCAN21 FOS ZBTB7A TRIM24 SP7 ZBTB32 ZNF567 PROSER3 TMEM147-AS1 HAUS5 U2AF1L4 KMT2B ZNF599 ENSG00000267049 ZNF792
GH19J035374 Enhancer 1.5 Ensembl ENCODE dbSUPER 14 -545.1 -545132 7.6 ZNF473 SP1 CC2D1A ELF3 ZKSCAN8 CBFA2T2 MLLT1 CEBPG GTF2F1 ZNF687 ZNF302 ZNF599 ZNF181 ZNF30 LINC00665 CLIP3 HAUS5 ZNF146 LINC01801 TMEM147-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01801 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01801 Gene

Genomic Locations for LINC01801 Gene
chr19:34,788,582-34,832,869
(GRCh38/hg38)
Size:
44,288 bases
Orientation:
Minus strand
chr19:35,279,486-35,323,773
(GRCh37/hg19)
Size:
44,288 bases
Orientation:
Minus strand

Genomic View for LINC01801 Gene

Genes around LINC01801 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01801 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01801 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01801 Gene

Proteins for LINC01801 Gene

Post-translational modifications for LINC01801 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01801 Gene

Domains & Families for LINC01801 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01801 Gene

Function for LINC01801 Gene

Phenotypes From GWAS Catalog for LINC01801 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01801 Gene

Localization for LINC01801 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01801 Gene

Pathways & Interactions for LINC01801 Gene

PathCards logo

SuperPathways for LINC01801 Gene

No Data Available

Interacting Proteins for LINC01801 Gene

Gene Ontology (GO) - Biological Process for LINC01801 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01801 Gene

Drugs & Compounds for LINC01801 Gene

No Compound Related Data Available

Transcripts for LINC01801 Gene

mRNA/cDNA for LINC01801 Gene

(3) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01801 Gene

No ASD Table

Relevant External Links for LINC01801 Gene

GeneLoc Exon Structure for
LINC01801
ECgene alternative splicing isoforms for
LINC01801

Expression for LINC01801 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01801 Gene

Orthologs for LINC01801 Gene

Evolution for LINC01801 Gene

ENSEMBL:
Gene Tree for LINC01801 (if available)
TreeFam:
Gene Tree for LINC01801 (if available)

No data available for Orthologs for LINC01801 Gene

Paralogs for LINC01801 Gene

No data available for Paralogs for LINC01801 Gene

Variants for LINC01801 Gene

Sequence variations from dbSNP and Humsavar for LINC01801 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000337934 -- 34,817,523(-) A/C intron_variant
rs1000428162 -- 34,830,628(-) T/C intron_variant
rs1000487669 -- 34,834,315(-) T/C upstream_transcript_variant
rs1000896217 -- 34,819,916(-) A/G intron_variant
rs1001150535 -- 34,830,204(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01801 Gene

Variant ID Type Subtype PubMed ID
dgv3516n100 CNV loss 25217958
dgv3517n100 CNV loss 25217958
esv2670616 CNV deletion 23128226
esv3644218 CNV loss 21293372
esv3644219 CNV loss 21293372
nsv510474 OTHER sequence alteration 20534489
nsv520859 CNV loss 19592680

Additional Variant Information for LINC01801 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01801

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01801 Gene

Disorders for LINC01801 Gene

Additional Disease Information for LINC01801

No disorders were found for LINC01801 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01801 Gene

Publications for LINC01801 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01801 Gene

Sources for LINC01801 Gene

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