Aliases for LINC01801 Gene

Subcategory (RNA class) for LINC01801 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01801 Gene

  • Long Intergenic Non-Protein Coding RNA 1801 2 3 5
  • LINC01801 2 5 165
  • NONHSAG025535.2 91
  • HSALNG0125532 164
  • CTC-523E23.4 3

External Ids for LINC01801 Gene

Summaries for LINC01801 Gene

GeneCards Summary for LINC01801 Gene

LINC01801 (Long Intergenic Non-Protein Coding RNA 1801) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01801 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01801 Gene

Genomics for LINC01801 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01801 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01801 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01801 Gene

Genomic Locations for LINC01801 Gene
chr19:34,788,527-34,832,869
(GRCh38/hg38)
Size:
44,343 bases
Orientation:
Minus strand
chr19:35,279,486-35,323,773
(GRCh37/hg19)
Size:
44,288 bases
Orientation:
Minus strand

Genomic View for LINC01801 Gene

Genes around LINC01801 on UCSC Golden Path with GeneCards custom track
LINC01801 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01801 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01801 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01801 Gene

Proteins for LINC01801 Gene

Post-translational modifications for LINC01801 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01801 Gene

Domains & Families for LINC01801 Gene

Gene Families for LINC01801 Gene

genes like me logo Genes that share domains with LINC01801: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01801 Gene

Function for LINC01801 Gene

Phenotypes From GWAS Catalog for LINC01801 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01801 Gene

Localization for LINC01801 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01801 Gene

Pathways & Interactions for LINC01801 Gene

PathCards logo

SuperPathways for LINC01801 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01801 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01801 Gene

Drugs & Compounds for LINC01801 Gene

No Compound Related Data Available

Transcripts for LINC01801 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01801 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E913_9606 lncRNA 2080 2

HGNC: 52592,

RefSeq: NR_033982,

URS000023D4EE_9606 lncRNA 2077 2

Ensembl: ENST00000590963 (view in UCSC) ,

LNCipedia: LINC01801:13,

URS0000EEC626_9606 lncRNA 1980 1

Ensembl: ENST00000657681 (view in UCSC) ,

URS0000EF13FE_9606 lncRNA 1509 1

Ensembl: ENST00000587150 (view in UCSC) ,

URS0000EF0732_9606 lncRNA 584 1

Ensembl: ENST00000654750 (view in UCSC) ,

LINC01801 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01801 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01801 Gene

No ASD Table

Relevant External Links for LINC01801 Gene

GeneLoc Exon Structure for
LINC01801

Expression for LINC01801 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01801

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01801 Gene

Orthologs for LINC01801 Gene

Evolution for LINC01801 Gene

ENSEMBL:
Gene Tree for LINC01801 (if available)
TreeFam:
Gene Tree for LINC01801 (if available)

No data available for Orthologs for LINC01801 Gene

Paralogs for LINC01801 Gene

No data available for Paralogs for LINC01801 Gene

Variants for LINC01801 Gene

Additional dbSNP identifiers (rs#s) for LINC01801 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01801 Gene

Variant ID Type Subtype PubMed ID
dgv3516n100 CNV loss 25217958
dgv3517n100 CNV loss 25217958
esv2670616 CNV deletion 23128226
esv3644218 CNV loss 21293372
esv3644219 CNV loss 21293372
nsv510474 OTHER sequence alteration 20534489
nsv520859 CNV loss 19592680

Additional Variant Information for LINC01801 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01801

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01801 Gene

Disorders for LINC01801 Gene

No disorders were found for LINC01801 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01801 Gene

Publications for LINC01801 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01801 Gene

Sources for LINC01801 Gene