Aliases for LINC01800 Gene

Subcategory (RNA class) for LINC01800 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01800 Gene

  • Long Intergenic Non-Protein Coding RNA 1800 2 3 5
  • Lnc-SERTAD2-3 168
  • NONHSAG027976 92
  • HSALNG0015506 167
  • NONHSAG027974 92
  • HSALNG0015493 167
  • LINC01800 2

External Ids for LINC01800 Gene

Previous GeneCards Identifiers for LINC01800 Gene

  • GC02M064847

Summaries for LINC01800 Gene

GeneCards Summary for LINC01800 Gene

LINC01800 (Long Intergenic Non-Protein Coding RNA 1800) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01800 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01800 Gene

Genomics for LINC01800 Gene

GeneHancer (GH) Regulatory Elements for LINC01800 Gene

Promoters and enhancers for LINC01800 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J064857 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +1.9 1869 9 EP300 CTCF TCF12 RBAK PHF8 ZIC2 REST ZBTB10 ZBTB11 ZNF423 LINC01800 SERTAD2 VPS54 ACTR2 AFTPH RAB1A SLC1A4 ENSG00000287123
GH02J064836 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 20.3 +24.0 24047 5.8 USF1 FOS EP300 POLR2A NFYB FOXA2 TCF12 CEBPB MAFF USF2 LINC01800 SERTAD2 RN7SL211P RNU6-548P SLC1A4 RAB1A ACTR2 AFTPH ENSG00000287123
GH02J064792 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.2 +67.4 67430 8.4 CTCF ZNF10 REST OSR2 ZNF263 RAD21 FOSL2 MEF2B OVOL3 BATF VPS54 SERTAD2 LINC01800 RNU6-548P LOC105374776 lnc-SERTAD2-7 lnc-AFTPH-5
GH02J064806 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.9 +56.2 56230 3.6 SP1 JUND FOS MYC TOE1 TAF9B BCL11A SIN3A CTCF TCF12 SERTAD2 LINC01800 CEP68 lnc-SERTAD2-7 LOC105374776
GH02J064823 Enhancer 0.8 Ensembl ENCODE dbSUPER 11.3 +38.1 38118 3.8 HDAC2 YY1 SPI1 SIN3A CHD7 EP300 BHLHE40 CTBP2 SERTAD2 LINC01800 RF00017-3214 lnc-SLC1A4-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01800 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01800 Gene

Genomic Locations for LINC01800 Gene
chr2:64,762,118-64,863,631
(GRCh38/hg38)
Size:
101,514 bases
Orientation:
Minus strand

Genomic View for LINC01800 Gene

Genes around LINC01800 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01800 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01800 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01800 Gene

Proteins for LINC01800 Gene

Post-translational modifications for LINC01800 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01800 Gene

Domains & Families for LINC01800 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01800 Gene

Function for LINC01800 Gene

Phenotypes From GWAS Catalog for LINC01800 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01800 Gene

Localization for LINC01800 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01800 Gene

Pathways & Interactions for LINC01800 Gene

PathCards logo

SuperPathways for LINC01800 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01800 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01800 Gene

Drugs & Compounds for LINC01800 Gene

No Compound Related Data Available

Transcripts for LINC01800 Gene

mRNA/cDNA for LINC01800 Gene

9 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01800 Gene

No ASD Table

Relevant External Links for LINC01800 Gene

GeneLoc Exon Structure for
LINC01800

Expression for LINC01800 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01800

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01800 Gene

Orthologs for LINC01800 Gene

Evolution for LINC01800 Gene

ENSEMBL:
Gene Tree for LINC01800 (if available)
TreeFam:
Gene Tree for LINC01800 (if available)

No data available for Orthologs for LINC01800 Gene

Paralogs for LINC01800 Gene

No data available for Paralogs for LINC01800 Gene

Variants for LINC01800 Gene

Additional dbSNP identifiers (rs#s) for LINC01800 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01800 Gene

Variant ID Type Subtype PubMed ID
esv3446504 CNV insertion 20981092
nsv582127 CNV gain 21841781
nsv953135 CNV duplication 24416366

Additional Variant Information for LINC01800 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01800

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01800 Gene

Disorders for LINC01800 Gene

Additional Disease Information for LINC01800

No disorders were found for LINC01800 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01800 Gene

Publications for LINC01800 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for LINC01800 Gene

Sources for LINC01800 Gene