Aliases for LINC01800 Gene

Data sources for LINC01800 Gene:

Subcategory (RNA class) for LINC01800 Gene

lncRNA

Aliases for LINC01800 Gene

External Ids for LINC01800 Gene

Previous GeneCards Identifiers for LINC01800 Gene

  • GC02M064847

Summaries for LINC01800 Gene

GeneCards Summary for LINC01800 Gene

LINC01800 (Long Intergenic Non-Protein Coding RNA 1800) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01800 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01800 Gene

Genomics for LINC01800 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01800 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01800 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01800 Gene

Latest Assembly
chr2:64,756,910-64,864,812
(GRCh38/hg38)
Size:
107,903 bases
Orientation:
Minus strand

Previous Assembly
chr2:65,073,264-65,090,765
(GRCh37/hg19 by Entrez Gene)
Size:
17,502 bases
Orientation:
Minus strand

chr2:65,073,264-65,090,760
(GRCh37/hg19 by Ensembl)
Size:
17,497 bases
Orientation:
Minus strand

Genomic View for LINC01800 Gene

Genes around LINC01800 on UCSC Golden Path with GeneCards custom track
LINC01800 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01800 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01800 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01800 Gene

Proteins for LINC01800 Gene

Post-translational modifications for LINC01800 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01800 Gene

Domains & Families for LINC01800 Gene

Gene Families for LINC01800 Gene

genes like me logo Genes that share domains with LINC01800: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01800 Gene

Function for LINC01800 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01800 Gene

Localization for LINC01800 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01800 Gene

Pathways & Interactions for LINC01800 Gene

PathCards logo

SuperPathways for LINC01800 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01800 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01800 Gene

Drugs & Compounds for LINC01800 Gene

No Compound Related Data Available

Transcripts for LINC01800 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01800 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000145DAD_9606 lncRNA 1977 3

Ensembl: ENST00000445865 (view in UCSC) ,

LNCipedia: lnc-SERTAD2-3:12, lnc-SERTAD2-3:8,

NONCODE: NONHSAT071135.2,

URS000075A82A_9606 lncRNA 1982 2

RefSeq: NR_110224,

LNCipedia: lnc-SERTAD2-3:7,

URS00008B2770_9606 lncRNA 10772 2

LNCipedia: lnc-SERTAD2-3:4,

NONCODE: NONHSAT071132.2,

URS00009BF584_9606 lncRNA 1977 2

LncBook: HSALNT0032767,

NONCODE: NONHSAT184758.1,

URS0000D5DF8E_9606 lncRNA 946 2

LncBook: HSALNT0032739,

LNCipedia: lnc-SERTAD2-3:10,

LINC01800 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01800 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01800 Gene

No ASD Table

Relevant External Links for LINC01800 Gene

GeneLoc Exon Structure for
LINC01800

Expression for LINC01800 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01800

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01800 Gene

Orthologs for LINC01800 Gene

Evolution for LINC01800 Gene

ENSEMBL:
Gene Tree for LINC01800 (if available)
TreeFam:
Gene Tree for LINC01800 (if available)

No data available for Orthologs for LINC01800 Gene

Paralogs for LINC01800 Gene

No data available for Paralogs for LINC01800 Gene

Variants for LINC01800 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01800 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01800 Gene

Variant ID Type Subtype PubMed ID
esv3446504 CNV insertion 20981092
nsv582127 CNV gain 21841781
nsv953135 CNV duplication 24416366

Additional Variant Information for LINC01800 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01800

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01800 Gene

Disorders for LINC01800 Gene

Additional Disease Information for LINC01800

No disorders were found for LINC01800 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01800 Gene

Publications for LINC01800 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01800 Gene

Sources for LINC01800 Gene