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Aliases for LINC01799 Gene
Subcategory (RNA class) for LINC01799 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC01799 Gene
External Ids for LINC01799 Gene
- HGNC: 52589
- Entrez Gene: 101060019
- Ensembl: ENSG00000230525
Summaries for LINC01799 Gene
GeneCards Summary for LINC01799 Gene
LINC01799 (Long Intergenic Non-Protein Coding RNA 1799) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01799 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01799 Gene
Genomics for LINC01799 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01799 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J066903 | Enhancer | 0.3 | Ensembl | 609.9 | -1.0 | -1035 | 0.8 | GATA2 | LINC01799 lnc-MEIS1-11 MEIS1 ETAA1 | |
| GH02J066905 | Enhancer | 0.2 | FANTOM5 | 600.7 | +1.1 | 1099 | 0.1 | LINC01799 LINC01628 MEIS1 ETAA1 | ||
| GH02J066896 | Enhancer | 0.6 | FANTOM5 Ensembl ENCODE | 12.9 | -6.6 | -6635 | 2 | ZNF335 | LINC01799 lnc-MEIS1-11 MEIS1 ETAA1 | |
| GH02J066872 | Enhancer | 0.7 | Ensembl ENCODE CraniofacialAtlas | 10.7 | -31.2 | -31235 | 2.4 | CEBPB BHLHE40 PKNOX1 | LINC01799 MEIS1 ENSG00000230355 ENSG00000224071 ETAA1 | |
| GH02J066929 | Enhancer | 1 | UCNEbase Ensembl ENCODE | 7.6 | +26.1 | 26103 | 2.1 | SP1 CEBPB ESR1 KLF16 PKNOX1 | LINC01799 LINC01628 lnc-ETAA1-16 ETAA1 MEIS1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01799 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01799 Gene
Genomic Locations for LINC01799 Gene
- chr2:66,904,436-66,971,466
- (GRCh38/hg38)
- Size:
- 67,031 bases
- Orientation:
- Plus strand
- chr2:67,131,568-67,198,594
- (GRCh37/hg19)
- Size:
- 67,027 bases
- Orientation:
- Plus strand
Genomic View for LINC01799 Gene
Genes around LINC01799 on UCSC Golden Path with GeneCards custom track
LINC01799 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2p14 by HGNC
- 2p14 by Entrez Gene
- 2p14 by Ensembl
LINC01799 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01799 Gene
Proteins for LINC01799 Gene
Post-translational modifications for LINC01799 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01799
- Origene Custom Protein Services for LINC01799
No data available for DME Specific Peptides for LINC01799 Gene
Domains & Families for LINC01799 Gene
Gene Families for LINC01799 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01799 Gene
Function for LINC01799 Gene
Phenotypes From GWAS Catalog for LINC01799 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01799
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01799 Gene
Localization for LINC01799 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01799 Gene
Transcripts for LINC01799 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01799 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075A832_9606 | lncRNA | 629 | 4 |
HGNC: 52589, RefSeq: NR_110169, LncBook: HSALNT0033094, LNCipedia: LINC01799:6, |
| URS000062015C_9606 | lncRNA | 386 | 4 |
Ensembl: ENST00000411701 (view in UCSC) , LncBook: HSALNT0033102, LNCipedia: LINC01799:7, NONCODE: NONHSAT071253.2, |
| URS00001C4EF1_9606 | lncRNA | 625 | 3 |
Ensembl: ENST00000426260 (view in UCSC) , LNCipedia: LINC01799:5, NONCODE: NONHSAT071249.2, |
| URS0000EF602C_9606 | lncRNA | 1061 | 1 |
Ensembl: ENST00000664251 (view in UCSC) , |
| URS0000EF2698_9606 | lncRNA | 544 | 1 |
Ensembl: ENST00000657974 (view in UCSC) , |
LINC01799 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01799 Gene
- 2 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01799
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC01799 Gene
- GeneLoc Exon Structure for
- LINC01799
Expression for LINC01799 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01799
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01799 Gene
Orthologs for LINC01799 Gene
No data available for Orthologs for LINC01799 Gene
Paralogs for LINC01799 Gene
No data available for Paralogs for LINC01799 Gene
Variants for LINC01799 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2762259 | CNV | loss | 21179565 |
| esv3591134 | CNV | loss | 21293372 |
| nsv961787 | CNV | duplication | 23825009 |
Additional Variant Information for LINC01799 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01799
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01799 Gene
Disorders for LINC01799 Gene
Additional Disease Information for LINC01799
No disorders were found for LINC01799 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01799 Gene
Publications for LINC01799 Gene
No publications were found for LINC01799 Gene.
No data available for Mastermind for LINC01799 Gene
Products for LINC01799 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01799
- Origene Custom Protein Services for LINC01799
- Browse OriGene Inhibitory RNA Products For LINC01799
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01799
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01799
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01799
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01799
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01799
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01799
Sources for LINC01799 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB