Aliases for LINC01799 Gene

Subcategory (RNA class) for LINC01799 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01799 Gene

  • Long Intergenic Non-Protein Coding RNA 1799 2 3 5
  • LINC01799 2 5 165
  • NONHSAG028029.2 91
  • HSALNG0015613 164

External Ids for LINC01799 Gene

Summaries for LINC01799 Gene

GeneCards Summary for LINC01799 Gene

LINC01799 (Long Intergenic Non-Protein Coding RNA 1799) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01799 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01799 Gene

Genomics for LINC01799 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01799 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J066903 Enhancer 0.3 Ensembl 609.9 -1.0 -1035 0.8 GATA2 LINC01799 lnc-MEIS1-11 MEIS1 ETAA1
GH02J066905 Enhancer 0.2 FANTOM5 600.7 +1.1 1099 0.1 LINC01799 LINC01628 MEIS1 ETAA1
GH02J066896 Enhancer 0.6 FANTOM5 Ensembl ENCODE 12.9 -6.6 -6635 2 ZNF335 LINC01799 lnc-MEIS1-11 MEIS1 ETAA1
GH02J066872 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 10.7 -31.2 -31235 2.4 CEBPB BHLHE40 PKNOX1 LINC01799 MEIS1 ENSG00000230355 ENSG00000224071 ETAA1
GH02J066929 Enhancer 1 UCNEbase Ensembl ENCODE 7.6 +26.1 26103 2.1 SP1 CEBPB ESR1 KLF16 PKNOX1 LINC01799 LINC01628 lnc-ETAA1-16 ETAA1 MEIS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01799 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01799 Gene

Genomic Locations for LINC01799 Gene
chr2:66,904,436-66,971,466
(GRCh38/hg38)
Size:
67,031 bases
Orientation:
Plus strand
chr2:67,131,568-67,198,594
(GRCh37/hg19)
Size:
67,027 bases
Orientation:
Plus strand

Genomic View for LINC01799 Gene

Genes around LINC01799 on UCSC Golden Path with GeneCards custom track
LINC01799 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01799 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01799 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01799 Gene

Proteins for LINC01799 Gene

Post-translational modifications for LINC01799 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01799 Gene

Domains & Families for LINC01799 Gene

Gene Families for LINC01799 Gene

genes like me logo Genes that share domains with LINC01799: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01799 Gene

Function for LINC01799 Gene

Phenotypes From GWAS Catalog for LINC01799 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01799 Gene

Localization for LINC01799 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01799 Gene

Pathways & Interactions for LINC01799 Gene

PathCards logo

SuperPathways for LINC01799 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01799 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01799 Gene

Drugs & Compounds for LINC01799 Gene

No Compound Related Data Available

Transcripts for LINC01799 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01799 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A832_9606 lncRNA 629 4

HGNC: 52589,

RefSeq: NR_110169,

LncBook: HSALNT0033094,

LNCipedia: LINC01799:6,

URS000062015C_9606 lncRNA 386 4

Ensembl: ENST00000411701 (view in UCSC) ,

LncBook: HSALNT0033102,

LNCipedia: LINC01799:7,

NONCODE: NONHSAT071253.2,

URS00001C4EF1_9606 lncRNA 625 3

Ensembl: ENST00000426260 (view in UCSC) ,

LNCipedia: LINC01799:5,

NONCODE: NONHSAT071249.2,

URS0000EF602C_9606 lncRNA 1061 1

Ensembl: ENST00000664251 (view in UCSC) ,

URS0000EF2698_9606 lncRNA 544 1

Ensembl: ENST00000657974 (view in UCSC) ,

LINC01799 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01799 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01799 Gene

No ASD Table

Relevant External Links for LINC01799 Gene

GeneLoc Exon Structure for
LINC01799

Expression for LINC01799 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01799

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01799 Gene

Orthologs for LINC01799 Gene

Evolution for LINC01799 Gene

ENSEMBL:
Gene Tree for LINC01799 (if available)
TreeFam:
Gene Tree for LINC01799 (if available)

No data available for Orthologs for LINC01799 Gene

Paralogs for LINC01799 Gene

No data available for Paralogs for LINC01799 Gene

Variants for LINC01799 Gene

Additional dbSNP identifiers (rs#s) for LINC01799 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01799 Gene

Variant ID Type Subtype PubMed ID
esv2762259 CNV loss 21179565
esv3591134 CNV loss 21293372
nsv961787 CNV duplication 23825009

Additional Variant Information for LINC01799 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01799

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01799 Gene

Disorders for LINC01799 Gene

No disorders were found for LINC01799 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01799 Gene

Publications for LINC01799 Gene

No publications were found for LINC01799 Gene.

No data available for Mastermind for LINC01799 Gene

Products for LINC01799 Gene

Sources for LINC01799 Gene