Free for academic non-profit institutions. Other users need a Commercial license
Aliases for LINC01798 Gene
Subcategory (RNA class) for LINC01798 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC01798 Gene
External Ids for LINC01798 Gene
- HGNC: 52588
- Entrez Gene: 100507073
- Ensembl: ENSG00000232046
Summaries for LINC01798 Gene
GeneCards Summary for LINC01798 Gene
LINC01798 (Long Intergenic Non-Protein Coding RNA 1798) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01798 include Hereditary Hemorrhagic Telangiectasia.
Additional gene information for LINC01798 Gene
- Monarch Initiative
- Search for LINC01798 at DataMed
- Search for LINC01798 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01798 Gene
Genomics for LINC01798 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01798 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH02J066572 | Promoter/Enhancer | 2.5 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 600.7 | +4.6 | 4629 | 11.5 | RNF2 ARHGAP35 CEBPG GATAD2A CTCF PRDM10 ZNF512 IKZF1 ZNF692 FOXA1 | LINC01798 MEIS1 MEIS1-AS2 MEIS1-AS3 piR-60985-052 ETAA1 | |
| GH02J066692 | Promoter/Enhancer | 1.8 | UCNEbase EPDnew Ensembl CraniofacialAtlas | 600.1 | +118.4 | 118439 | 3.6 | PRDM10 ZBTB44 CEBPB CBX2 PRDM6 POU5F1 | LINC01798 LINC01797 piR-39341-191 MEIS1 ETAA1 | |
| GH02J066571 | Enhancer | 0.5 | UCNEbase ENCODE | 600.7 | -1.7 | -1700 | 0.8 | LINC01798 lnc-SPRED2-20 MEIS1 ETAA1 | ||
| GH02J066565 | Enhancer | 1.5 | UCNEbase Ensembl ENCODE dbSUPER | 0.4 | -5.9 | -5886 | 4.7 | PRDM10 ZNF512 RFX1 JUND PKNOX1 POLR2A ZNF501 FOXJ2 EP300 SCRT2 | lnc-SPRED2-20 MEIS1 MEIS1-AS3 MEIS1-AS2 LINC01798 ETAA1 | |
| GH02J066573 | Enhancer | 0.3 | UCNEbase | 0.7 | -2.2 | -2239 | 0.2 | LINC01798 lnc-SPRED2-20 MEIS1 ETAA1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01798 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01798 Gene
Genomic Locations for LINC01798 Gene
- chr2:66,574,030-66,828,792
- (GRCh38/hg38)
- Size:
- 254,763 bases
- Orientation:
- Plus strand
- chr2:66,801,162-66,957,289
- (GRCh37/hg19)
- Size:
- 156,128 bases
- Orientation:
- Plus strand
Genomic View for LINC01798 Gene
Genes around LINC01798 on UCSC Golden Path with GeneCards custom track
LINC01798 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 2p14 by HGNC
- 2p14 by Entrez Gene
- 2p14 by Ensembl
LINC01798 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01798 Gene
Proteins for LINC01798 Gene
Post-translational modifications for LINC01798 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01798
- Origene Custom Protein Services for LINC01798
No data available for DME Specific Peptides for LINC01798 Gene
Domains & Families for LINC01798 Gene
Gene Families for LINC01798 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01798 Gene
Function for LINC01798 Gene
Phenotypes From GWAS Catalog for LINC01798 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01798
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01798 Gene
Localization for LINC01798 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01798 Gene
Transcripts for LINC01798 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01798 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075DC4A_9606 | lncRNA | 765 | 4 |
HGNC: 52588, RefSeq: NR_110156, LncBook: HSALNT0033050, LNCipedia: LINC01798:17, |
| URS000027DA18_9606 | lncRNA | 555 | 4 |
Ensembl: ENST00000423168 (view in UCSC) , LncBook: HSALNT0033059, LNCipedia: LINC01798:19, NONCODE: NONHSAT071235.2, |
| URS0000345EB0_9606 | lncRNA | 682 | 3 |
Ensembl: ENST00000433396 (view in UCSC) , LNCipedia: LINC01798:16, NONCODE: NONHSAT071233.2, |
| URS00002C1661_9606 | lncRNA | 553 | 3 |
Ensembl: ENST00000428590 (view in UCSC) , LNCipedia: LINC01798:27, NONCODE: NONHSAT071238.2, |
| URS000026D2E8_9606 | lncRNA | 528 | 3 |
Ensembl: ENST00000412944 (view in UCSC) , LNCipedia: LINC01798:28, NONCODE: NONHSAT071239.2, |
LINC01798 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01798 Gene
- 7 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01798
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC01798 Gene
- GeneLoc Exon Structure for
- LINC01798
Expression for LINC01798 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01798
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01798 Gene
Orthologs for LINC01798 Gene
No data available for Orthologs for LINC01798 Gene
Paralogs for LINC01798 Gene
No data available for Paralogs for LINC01798 Gene
Variants for LINC01798 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3399130 | CNV | insertion | 20981092 |
| esv3583854 | CNV | loss | 25503493 |
| esv3583855 | CNV | loss | 25503493 |
| esv3591123 | CNV | loss | 21293372 |
| esv3591125 | CNV | loss | 21293372 |
| esv3591126 | CNV | gain | 21293372 |
| nsv1012523 | CNV | loss | 25217958 |
| nsv476739 | CNV | novel sequence insertion | 20440878 |
| nsv478925 | CNV | novel sequence insertion | 20440878 |
| nsv522353 | CNV | loss | 19592680 |
| nsv834248 | CNV | gain | 17160897 |
Additional Variant Information for LINC01798 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01798
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01798 Gene
Disorders for LINC01798 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| hereditary hemorrhagic telangiectasia |
|
Search LINC01798 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC01798
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01798 Gene
Publications for LINC01798 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3
Products for LINC01798 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01798
- Origene Custom Protein Services for LINC01798
- Browse OriGene Inhibitory RNA Products For LINC01798
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01798
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01798
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01798
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01798
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01798
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01798
Sources for LINC01798 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB