Aliases for LINC01798 Gene

Subcategory (RNA class) for LINC01798 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01798 Gene

  • Long Intergenic Non-Protein Coding RNA 1798 2 3 5
  • LINC01798 2 5 165
  • NONHSAG028024.2 91
  • HSALNG0015598 164

External Ids for LINC01798 Gene

Summaries for LINC01798 Gene

GeneCards Summary for LINC01798 Gene

LINC01798 (Long Intergenic Non-Protein Coding RNA 1798) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01798 include Hereditary Hemorrhagic Telangiectasia.

Additional gene information for LINC01798 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01798 Gene

Genomics for LINC01798 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01798 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J066572 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +4.6 4629 11.5 RNF2 ARHGAP35 CEBPG GATAD2A CTCF PRDM10 ZNF512 IKZF1 ZNF692 FOXA1 LINC01798 MEIS1 MEIS1-AS2 MEIS1-AS3 piR-60985-052 ETAA1
GH02J066692 Promoter/Enhancer 1.8 UCNEbase EPDnew Ensembl CraniofacialAtlas 600.1 +118.4 118439 3.6 PRDM10 ZBTB44 CEBPB CBX2 PRDM6 POU5F1 LINC01798 LINC01797 piR-39341-191 MEIS1 ETAA1
GH02J066571 Enhancer 0.5 UCNEbase ENCODE 600.7 -1.7 -1700 0.8 LINC01798 lnc-SPRED2-20 MEIS1 ETAA1
GH02J066565 Enhancer 1.5 UCNEbase Ensembl ENCODE dbSUPER 0.4 -5.9 -5886 4.7 PRDM10 ZNF512 RFX1 JUND PKNOX1 POLR2A ZNF501 FOXJ2 EP300 SCRT2 lnc-SPRED2-20 MEIS1 MEIS1-AS3 MEIS1-AS2 LINC01798 ETAA1
GH02J066573 Enhancer 0.3 UCNEbase 0.7 -2.2 -2239 0.2 LINC01798 lnc-SPRED2-20 MEIS1 ETAA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01798 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01798 Gene

Genomic Locations for LINC01798 Gene
chr2:66,574,030-66,828,792
(GRCh38/hg38)
Size:
254,763 bases
Orientation:
Plus strand
chr2:66,801,162-66,957,289
(GRCh37/hg19)
Size:
156,128 bases
Orientation:
Plus strand

Genomic View for LINC01798 Gene

Genes around LINC01798 on UCSC Golden Path with GeneCards custom track
LINC01798 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01798 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01798 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01798 Gene

Proteins for LINC01798 Gene

Post-translational modifications for LINC01798 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01798 Gene

Domains & Families for LINC01798 Gene

Gene Families for LINC01798 Gene

genes like me logo Genes that share domains with LINC01798: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01798 Gene

Function for LINC01798 Gene

Phenotypes From GWAS Catalog for LINC01798 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01798 Gene

Localization for LINC01798 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01798 Gene

Pathways & Interactions for LINC01798 Gene

PathCards logo

SuperPathways for LINC01798 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01798 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01798 Gene

Drugs & Compounds for LINC01798 Gene

No Compound Related Data Available

Transcripts for LINC01798 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01798 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DC4A_9606 lncRNA 765 4

HGNC: 52588,

RefSeq: NR_110156,

LncBook: HSALNT0033050,

LNCipedia: LINC01798:17,

URS000027DA18_9606 lncRNA 555 4

Ensembl: ENST00000423168 (view in UCSC) ,

LncBook: HSALNT0033059,

LNCipedia: LINC01798:19,

NONCODE: NONHSAT071235.2,

URS0000345EB0_9606 lncRNA 682 3

Ensembl: ENST00000433396 (view in UCSC) ,

LNCipedia: LINC01798:16,

NONCODE: NONHSAT071233.2,

URS00002C1661_9606 lncRNA 553 3

Ensembl: ENST00000428590 (view in UCSC) ,

LNCipedia: LINC01798:27,

NONCODE: NONHSAT071238.2,

URS000026D2E8_9606 lncRNA 528 3

Ensembl: ENST00000412944 (view in UCSC) ,

LNCipedia: LINC01798:28,

NONCODE: NONHSAT071239.2,

LINC01798 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01798 Gene

7 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01798 Gene

No ASD Table

Relevant External Links for LINC01798 Gene

GeneLoc Exon Structure for
LINC01798

Expression for LINC01798 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01798

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01798 Gene

Orthologs for LINC01798 Gene

Evolution for LINC01798 Gene

ENSEMBL:
Gene Tree for LINC01798 (if available)
TreeFam:
Gene Tree for LINC01798 (if available)

No data available for Orthologs for LINC01798 Gene

Paralogs for LINC01798 Gene

No data available for Paralogs for LINC01798 Gene

Variants for LINC01798 Gene

Additional dbSNP identifiers (rs#s) for LINC01798 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01798 Gene

Variant ID Type Subtype PubMed ID
esv3399130 CNV insertion 20981092
esv3583854 CNV loss 25503493
esv3583855 CNV loss 25503493
esv3591123 CNV loss 21293372
esv3591125 CNV loss 21293372
esv3591126 CNV gain 21293372
nsv1012523 CNV loss 25217958
nsv476739 CNV novel sequence insertion 20440878
nsv478925 CNV novel sequence insertion 20440878
nsv522353 CNV loss 19592680
nsv834248 CNV gain 17160897

Additional Variant Information for LINC01798 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01798

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01798 Gene

Disorders for LINC01798 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01798 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hereditary hemorrhagic telangiectasia
  • hht
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01798: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01798 Gene

Publications for LINC01798 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

Products for LINC01798 Gene

Sources for LINC01798 Gene