Aliases for LINC01797 Gene

Subcategory (RNA class) for LINC01797 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01797 Gene

  • Long Intergenic Non-Protein Coding RNA 1797 2 3 5
  • LINC01797 2 168
  • HSALNG0015602 167
  • NONHSAG028025 92

External Ids for LINC01797 Gene

Summaries for LINC01797 Gene

GeneCards Summary for LINC01797 Gene

LINC01797 (Long Intergenic Non-Protein Coding RNA 1797) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01797 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01797 Gene

Genomics for LINC01797 Gene

GeneHancer (GH) Regulatory Elements for LINC01797 Gene

Promoters and enhancers for LINC01797 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J066697 Enhancer 1.5 VISTA UCNEbase FANTOM5 Ensembl CraniofacialAtlas 0.7 +3.1 3066 5.2 ZNF217 EP300 ZSCAN5C ATF2 NR2F2 RXRA GATA3 FOXA1 ZNF335 NR2F1 LINC01797 piR-39341-191 LINC01798
GH02J066692 Promoter/Enhancer 1.5 UCNEbase Ensembl CraniofacialAtlas 0.4 +10.8 10783 3.6 EP300 CEBPB CBX2 PRDM6 POU5F1 PRDM10 ZBTB44 LINC01797 piR-39341-191 LINC01798
GH02J066695 Enhancer 0.7 UCNEbase Ensembl 0.4 +7.7 7738 0.6 EP300 POLR2A LINC01797 piR-39341-191 LINC01798
GH02J066688 Enhancer 0.7 UCNEbase Ensembl CraniofacialAtlas 0.4 +14.5 14517 1.5 LINC01797 piR-39341-191 LINC01798
GH02J066696 Enhancer 0.5 Ensembl CraniofacialAtlas 0.4 +6.6 6617 0.7 FOXP2 POLR2A LINC01797 piR-39341-191 LINC01798
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01797 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01797 Gene

Genomic Locations for LINC01797 Gene
chr2:66,696,190-66,703,252
(GRCh38/hg38)
Size:
7,063 bases
Orientation:
Minus strand
chr2:66,924,257-66,930,359
(GRCh37/hg19)
Size:
6,103 bases
Orientation:
Minus strand

Genomic View for LINC01797 Gene

Genes around LINC01797 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01797 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01797 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01797 Gene

Proteins for LINC01797 Gene

Post-translational modifications for LINC01797 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01797 Gene

Domains & Families for LINC01797 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01797 Gene

Function for LINC01797 Gene

Phenotypes From GWAS Catalog for LINC01797 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01797 Gene

Localization for LINC01797 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01797 Gene

Pathways & Interactions for LINC01797 Gene

PathCards logo

SuperPathways for LINC01797 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01797 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01797 Gene

Drugs & Compounds for LINC01797 Gene

No Compound Related Data Available

Transcripts for LINC01797 Gene

mRNA/cDNA for LINC01797 Gene

11 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
5 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01797 Gene

No ASD Table

Relevant External Links for LINC01797 Gene

GeneLoc Exon Structure for
LINC01797

Expression for LINC01797 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01797 Gene

Orthologs for LINC01797 Gene

Evolution for LINC01797 Gene

ENSEMBL:
Gene Tree for LINC01797 (if available)
TreeFam:
Gene Tree for LINC01797 (if available)

No data available for Orthologs for LINC01797 Gene

Paralogs for LINC01797 Gene

No data available for Paralogs for LINC01797 Gene

Variants for LINC01797 Gene

Additional dbSNP identifiers (rs#s) for LINC01797 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01797 Gene

Variant ID Type Subtype PubMed ID
nsv1012523 CNV loss 25217958
nsv834248 CNV gain 17160897

Additional Variant Information for LINC01797 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01797

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01797 Gene

Disorders for LINC01797 Gene

Additional Disease Information for LINC01797

No disorders were found for LINC01797 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01797 Gene

Publications for LINC01797 Gene

No publications were found for LINC01797 Gene.

No data available for Mastermind for LINC01797 Gene

Products for LINC01797 Gene

Sources for LINC01797 Gene