Aliases for LINC01797 Gene

Subcategory (RNA class) for LINC01797 Gene


Number of RNA Genes sources:

3 / 17

Aliases for LINC01797 Gene

  • Long Intergenic Non-Protein Coding RNA 1797 2 3 5
  • LINC01797 2 5 165
  • NONHSAG028025.2 91
  • HSALNG0015602 164

External Ids for LINC01797 Gene

Summaries for LINC01797 Gene

GeneCards Summary for LINC01797 Gene

LINC01797 (Long Intergenic Non-Protein Coding RNA 1797) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01797 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01797 Gene

Genomics for LINC01797 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01797 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J066697 Enhancer 1.5 VISTA UCNEbase FANTOM5 Ensembl CraniofacialAtlas 0.7 +3.1 3066 5.2 ATF7 POLR2A NR2C1 SCRT2 ZSCAN5C NR2C2 ZNF217 ATF2 SCRT1 NR2F2 LINC01797 piR-39341-191 LINC01798 MEIS1 ETAA1
GH02J066692 Promoter/Enhancer 1.8 UCNEbase EPDnew Ensembl CraniofacialAtlas 0.4 +10.8 10783 3.6 PRDM10 ZBTB44 CEBPB CBX2 PRDM6 POU5F1 LINC01798 LINC01797 piR-39341-191 MEIS1 ETAA1
GH02J066695 Enhancer 0.6 UCNEbase Ensembl 0.4 +7.7 7738 0.6 POLR2A LINC01797 piR-39341-191 LINC01798 MEIS1 ETAA1
GH02J066688 Enhancer 0.7 UCNEbase Ensembl CraniofacialAtlas 0.4 +14.5 14517 1.5 LINC01797 piR-39341-191 LINC01798 MEIS1 ETAA1
GH02J066686 Enhancer 0.6 Ensembl 0.4 +16.6 16552 2.2 CEBPB ZNF316 ZSCAN5C MAFK ATF2 MAFG CEBPG ZNF335 ATF4 ATF3 LINC01797 piR-39341-191 LINC01798 MEIS1 ETAA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01797 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01797 Gene

Genomic Locations for LINC01797 Gene
7,063 bases
Minus strand
6,103 bases
Minus strand

Genomic View for LINC01797 Gene

Genes around LINC01797 on UCSC Golden Path with GeneCards custom track
LINC01797 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01797 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01797 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01797 Gene

Proteins for LINC01797 Gene

Post-translational modifications for LINC01797 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01797 Gene

Domains & Families for LINC01797 Gene

Gene Families for LINC01797 Gene

genes like me logo Genes that share domains with LINC01797: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01797 Gene

Function for LINC01797 Gene

Phenotypes From GWAS Catalog for LINC01797 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01797 Gene

Localization for LINC01797 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01797 Gene

Pathways & Interactions for LINC01797 Gene

PathCards logo

SuperPathways for LINC01797 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01797 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01797 Gene

Drugs & Compounds for LINC01797 Gene

No Compound Related Data Available

Transcripts for LINC01797 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01797 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C9FF_9606 lncRNA 860 4

HGNC: 52587,

RefSeq: NR_110264,

LncBook: HSALNT0033068,

LNCipedia: LINC01797:9,

URS00005EEA8C_9606 lncRNA 218 4

Ensembl: ENST00000432410 (view in UCSC) ,

LncBook: HSALNT0033071,

LNCipedia: LINC01797:11,


URS00005C29DC_9606 lncRNA 765 3

Ensembl: ENST00000433432 (view in UCSC) ,

LNCipedia: LINC01797:7,


URS000075D7AC_9606 lncRNA 574 3

RefSeq: NR_110265,

LncBook: HSALNT0033069,

LNCipedia: LINC01797:8,

URS0000EF36DF_9606 lncRNA 1241 1

Ensembl: ENST00000660433 (view in UCSC) ,

LINC01797 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01797 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01797 Gene

No ASD Table

Relevant External Links for LINC01797 Gene

GeneLoc Exon Structure for

Expression for LINC01797 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01797 Gene

Orthologs for LINC01797 Gene

Evolution for LINC01797 Gene

Gene Tree for LINC01797 (if available)
Gene Tree for LINC01797 (if available)

No data available for Orthologs for LINC01797 Gene

Paralogs for LINC01797 Gene

No data available for Paralogs for LINC01797 Gene

Variants for LINC01797 Gene

Additional dbSNP identifiers (rs#s) for LINC01797 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01797 Gene

Variant ID Type Subtype PubMed ID
nsv1012523 CNV loss 25217958
nsv834248 CNV gain 17160897

Additional Variant Information for LINC01797 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01797 Gene

Disorders for LINC01797 Gene

No disorders were found for LINC01797 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01797 Gene

Publications for LINC01797 Gene

No publications were found for LINC01797 Gene.

No data available for Mastermind for LINC01797 Gene

Products for LINC01797 Gene

Sources for LINC01797 Gene