Aliases for LINC01796 Gene

Data sources for LINC01796 Gene:

Subcategory (RNA class) for LINC01796 Gene

lncRNA

Aliases for LINC01796 Gene

External Ids for LINC01796 Gene

Summaries for LINC01796 Gene

GeneCards Summary for LINC01796 Gene

LINC01796 (Long Intergenic Non-Protein Coding RNA 1796) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01796 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01796 Gene

Genomics for LINC01796 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01796 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J102894 Enhancer 0.7 Ensembl 250.7 +0.5 479 1.4 IKZF1 ZEB2 SPI1 ATF1 STAT5A POLR2A MYC MAX EHMT2 EP400 LINC01796 HSALNG0017445 HSALNG0017444 TMEM182
GH02J102891 Enhancer 0.4 Ensembl 0.7 +4.4 4379 2.4 SPI1 POLR2A MAX HSALNG0017445 LINC01796 HSALNG0017444 TMEM182
GH02J102892 Enhancer 0.3 Ensembl 0.7 +2.7 2679 0.6 FEZF1 PRDM6 HSALNG0017445 LINC01796 HSALNG0017444 TMEM182
GH02J102885 Enhancer 0.4 Ensembl 0.4 +9.6 9579 1.2 NFE2 ZNF512 ZNF157 HSALNG0017444 MFSD9 HSALNG0017445 LINC01796 TMEM182
GH02J102890 Enhancer 0.2 Ensembl 0.4 +6.3 6279 0.2 HSALNG0017445 HSALNG0017444 LINC01796 TMEM182
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01796 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01796 Gene

Latest Assembly
chr2:102,873,183-102,895,780
(GRCh38/hg38)
Size:
22,598 bases
Orientation:
Minus strand

Previous Assembly
chr2:103,489,798-103,512,180
(GRCh37/hg19 by Entrez Gene)
Size:
22,383 bases
Orientation:
Minus strand

Genomic View for LINC01796 Gene

Genes around LINC01796 on UCSC Golden Path with GeneCards custom track
LINC01796 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01796 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01796 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01796 Gene

Proteins for LINC01796 Gene

Post-translational modifications for LINC01796 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01796 Gene

Domains & Families for LINC01796 Gene

Gene Families for LINC01796 Gene

genes like me logo Genes that share domains with LINC01796: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01796 Gene

Function for LINC01796 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01796 Gene

Localization for LINC01796 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01796 Gene

Pathways & Interactions for LINC01796 Gene

PathCards logo

SuperPathways for LINC01796 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01796 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01796 Gene

Drugs & Compounds for LINC01796 Gene

No Compound Related Data Available

Transcripts for LINC01796 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01796 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000076EA26_9606 lncRNA 709 2

RefSeq: NR_135562,

LNCipedia: LINC01796:2,

URS0000EEF87A_9606 lncRNA 1319 1

Ensembl: ENST00000663518 (view in UCSC) ,

URS0000EF4A68_9606 lncRNA 888 1

Ensembl: ENST00000611915 (view in UCSC) ,

URS0000EF2B18_9606 lncRNA 731 1

Ensembl: ENST00000670084 (view in UCSC) ,

URS0000EF06BF_9606 lncRNA 526 1

Ensembl: ENST00000657317 (view in UCSC) ,

LINC01796 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01796 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01796 Gene

No ASD Table

Relevant External Links for LINC01796 Gene

GeneLoc Exon Structure for
LINC01796

Expression for LINC01796 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01796 Gene

Orthologs for LINC01796 Gene

Evolution for LINC01796 Gene

ENSEMBL:
Gene Tree for LINC01796 (if available)
TreeFam:
Gene Tree for LINC01796 (if available)

No data available for Orthologs for LINC01796 Gene

Paralogs for LINC01796 Gene

No data available for Paralogs for LINC01796 Gene

Variants for LINC01796 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01796 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01796 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01796

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01796 Gene

Disorders for LINC01796 Gene

Additional Disease Information for LINC01796

No disorders were found for LINC01796 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01796 Gene

Publications for LINC01796 Gene

No publications were found for LINC01796 Gene.

No data available for Mastermind for LINC01796 Gene

Products for LINC01796 Gene

Sources for LINC01796 Gene