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Aliases for LINC01796 Gene

Subcategory (RNA class) for LINC01796 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01796 Gene

  • Long Intergenic Non-Protein Coding RNA 1796 2 3 5

External Ids for LINC01796 Gene

Summaries for LINC01796 Gene

GeneCards Summary for LINC01796 Gene

LINC01796 (Long Intergenic Non-Protein Coding RNA 1796) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01796 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01796 Gene

Genomics for LINC01796 Gene

GeneHancer (GH) Regulatory Elements for LINC01796 Gene

Promoters and enhancers for LINC01796 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I102931 Enhancer 0.9 VISTA UCNEbase 0.3 -36.9 -36860 1.3 PKNOX1 GATA3 CREB1 DPF2 FOSL2 FOS GC02P102943 LINC01796 TMEM182
GH02I102921 Enhancer 0.8 VISTA UCNEbase 0.3 -26.9 -26906 1.5 GC02P102943 LINC01796 TMEM182
GH02I102801 Enhancer 1 ENCODE dbSUPER 0.2 +93.3 93264 2.1 ATF1 FOXA2 ZNF529 RAD21 YY1 CHAMP1 ZNF280A TCF12 ZNF143 ATF7 MFSD9 TMEM182 LINC01796 GC02P101903
GH02I102806 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 +89.4 89405 0.3 CTCF KLF11 ZNF654 TFE3 RXRA TRIM22 MAX REST RAD21 TEAD3 TMEM182 LINC01796 GC02P101903
GH02I102848 Enhancer 0.9 Ensembl ENCODE 0.2 +47.1 47071 0.6 CTCF PKNOX1 SAP130 ARID4B ZNF384 ZNF335 GLIS2 ZBTB48 PATZ1 ZNF639 LINC01796 TMEM182 GC02P101903
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01796 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01796 Gene

Genomic Locations for LINC01796 Gene
chr2:102,873,283-102,895,751
(GRCh38/hg38)
Size:
22,469 bases
Orientation:
Minus strand

Genomic View for LINC01796 Gene

Genes around LINC01796 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01796 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01796 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01796 Gene

Proteins for LINC01796 Gene

Post-translational modifications for LINC01796 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01796 Gene

Domains & Families for LINC01796 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01796 Gene

Function for LINC01796 Gene

Phenotypes From GWAS Catalog for LINC01796 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01796 Gene

Localization for LINC01796 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01796 Gene

Pathways & Interactions for LINC01796 Gene

SuperPathways for LINC01796 Gene

No Data Available

Interacting Proteins for LINC01796 Gene

Gene Ontology (GO) - Biological Process for LINC01796 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01796 Gene

Drugs & Compounds for LINC01796 Gene

No Compound Related Data Available

Transcripts for LINC01796 Gene

mRNA/cDNA for LINC01796 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01796 Gene

No ASD Table

Relevant External Links for LINC01796 Gene

GeneLoc Exon Structure for
LINC01796
ECgene alternative splicing isoforms for
LINC01796

Expression for LINC01796 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01796 Gene

Orthologs for LINC01796 Gene

Evolution for LINC01796 Gene

ENSEMBL:
Gene Tree for LINC01796 (if available)
TreeFam:
Gene Tree for LINC01796 (if available)

No data available for Orthologs for LINC01796 Gene

Paralogs for LINC01796 Gene

No data available for Paralogs for LINC01796 Gene

Variants for LINC01796 Gene

Sequence variations from dbSNP and Humsavar for LINC01796 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000061623 -- 102,891,620(-) C/T intron_variant
rs1000084719 -- 102,874,264(-) A/G intron_variant
rs1000092727 -- 102,873,348(-) G/A non_coding_transcript_variant
rs1000111569 -- 102,895,079(-) G/T intron_variant
rs1000210212 -- 102,889,086(-) A/G intron_variant

Additional Variant Information for LINC01796 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01796

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01796 Gene

Disorders for LINC01796 Gene

Additional Disease Information for LINC01796

No disorders were found for LINC01796 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01796 Gene

Publications for LINC01796 Gene

No publications were found for LINC01796 Gene.

Products for LINC01796 Gene

Sources for LINC01796 Gene

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