Aliases for LINC01793 Gene

Data sources for LINC01793 Gene:

RNA type for LINC01793 Gene

lncRNA

Aliases for LINC01793 Gene

External Ids for LINC01793 Gene

Summaries for LINC01793 Gene

GeneCards Summary for LINC01793 Gene

LINC01793 (Long Intergenic Non-Protein Coding RNA 1793) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01793 Gene

Genomics for LINC01793 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01793 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J059175 Enhancer 0.2 Ensembl 250.7 +1.7 1749 1 LINC01793 piR-36100-011 piR-50106-006 HSALNG0015137 ENSG00000285673 FANCL
GH02J059183 Enhancer 0.6 UCNEbase Ensembl 0.4 +11.1 11149 1.4 SCRT2 HSALNG0015137 LINC01793 piR-36100-011 ENSG00000285673 FANCL
GH02J059182 Enhancer 0.5 Ensembl 0.4 +9.0 8991 0.7 ZIC2 REST CTCF YY1 RAD21 SMC3 ZNF143 XRCC5 HSALNG0015137 LINC01793 piR-36100-011 ENSG00000285673 FANCL
GH02J059249 Enhancer 1.1 VISTA UCNEbase Ensembl 0.2 +76.7 76659 1.6 ZNF10 PKNOX1 ZNF692 ZBTB17 USF1 ZNF335 HSALNG0015132-001 lnc-VRK2-19 LINC01793 LOC105374754 HSALNG0015140 ENSG00000285673 ENSG00000233891 ENSG00000271955
GH02J059201 Enhancer 0.6 UCNEbase 0.3 +28.7 28686 0.4 BCL6 KAT2B SOX13 HSALNG0015138 HSALNG0015137 LINC01793 ENSG00000285673 FANCL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01793 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01793 Gene

Latest Assembly
chr2:59,173,352-59,361,677
(GRCh38/hg38)
Size:
188,326 bases
Orientation:
Plus strand

Previous Assembly
chr2:59,444,843-59,506,535
(GRCh37/hg19 by Entrez Gene)
Size:
61,693 bases
Orientation:
Plus strand

chr2:59,444,843-59,506,535
(GRCh37/hg19 by Ensembl)
Size:
61,693 bases
Orientation:
Plus strand

Genomic View for LINC01793 Gene

Genes around LINC01793 on UCSC Golden Path with GeneCards custom track
LINC01793 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01793 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01793 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01793 Gene

Proteins for LINC01793 Gene

Post-translational modifications for LINC01793 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01793 Gene

Domains & Families for LINC01793 Gene

Gene Families for LINC01793 Gene

genes like me logo Genes that share domains with LINC01793: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01793 Gene

Function for LINC01793 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01793 Gene

Localization for LINC01793 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01793 Gene

Pathways & Interactions for LINC01793 Gene

PathCards logo

SuperPathways for LINC01793 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01793 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01793 Gene

Drugs & Compounds for LINC01793 Gene

No Compound Related Data Available

Transcripts for LINC01793 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01793 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000012833A_9606 lncRNA 2039 5

RefSeq: NR_110219,

Ensembl: ENST00000409590 (view in UCSC) ,

LncBook: HSALNT0032075,

LNCipedia: LINC01793:3,

NONCODE: NONHSAT070869.2,

URS00009AFD4B_9606 lncRNA 2036 2

LncBook: HSALNT0032076,

NONCODE: NONHSAT181840.1,

URS0001BE7D11_9606 lncRNA 7517 1

LncBook: HSALNT0032065,

URS0001BF97CA_9606 lncRNA 4822 1

LncBook: HSALNT0032064,

URS0001BE6B64_9606 lncRNA 2036 1

LncBook: HSALNT0032075,

LINC01793 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01793 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01793 Gene

No ASD Table

Relevant External Links for LINC01793 Gene

GeneLoc Exon Structure for
LINC01793

Expression for LINC01793 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01793 Gene

Orthologs for LINC01793 Gene

Evolution for LINC01793 Gene

ENSEMBL:
Gene Tree for LINC01793 (if available)
TreeFam:
Gene Tree for LINC01793 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01793

No data available for Orthologs for LINC01793 Gene

Paralogs for LINC01793 Gene

No data available for Paralogs for LINC01793 Gene

Variants for LINC01793 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01793 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01793 Gene

Variant ID Type Subtype PubMed ID
esv2674366 CNV deletion 23128226
esv32749 CNV gain 17666407
esv3590979 CNV gain 21293372
esv3590980 CNV loss 21293372
nsv582099 CNV loss 21841781
nsv834170 CNV loss 17160897

Additional Variant Information for LINC01793 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01793
Leiden Open Variation Database (LOVD)
LINC01793

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01793 Gene

Disorders for LINC01793 Gene

Additional Disease Information for LINC01793

No disorders were found for LINC01793 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01793 Gene

Publications for LINC01793 Gene

  1. Overexpression of lncRNA LINC01793 acts as a potential predictor for progression and poor prognosis of gastric cancer. (PMID: 29978448) Huang S … Chen L (Histology and histopathology 2019) 3
  2. A genome-wide association study of breast and prostate cancer in the NHLBI's Framingham Heart Study. (PMID: 17903305) Murabito JM … Hwang SJ (BMC medical genetics 2007) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01793 Gene

Sources for LINC01793 Gene