Aliases for LINC01792 Gene

Subcategory (RNA class) for LINC01792 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01792 Gene

  • Long Intergenic Non-Protein Coding RNA 1792 2 3 5
  • LINC01792 2 168
  • NONHSAG030217 92
  • HSALNG0021489 167

External Ids for LINC01792 Gene

Summaries for LINC01792 Gene

GeneCards Summary for LINC01792 Gene

LINC01792 (Long Intergenic Non-Protein Coding RNA 1792) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01792 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01792 Gene

Genomics for LINC01792 Gene

GeneHancer (GH) Regulatory Elements for LINC01792 Gene

Promoters and enhancers for LINC01792 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J200735 Enhancer 0.9 Ensembl ENCODE 500.7 -1.2 -1214 2.8 ZNF217 CTCF ZSCAN5C TEAD4 REST RAD21 SKI TEAD1 SMC3 OSR2 LINC01792 RNU1-133P BZW1 BZW1-AS1 AOX1 lnc-BZW1-3 AOX2P AOX3P-AOX2P lnc-AOX1-1
GH02J200712 Promoter/Enhancer 1.5 ENCODE CraniofacialAtlas 0.4 +21.8 21775 1.7 ZBTB40 ZNF217 CTCF SIN3A TCF12 POLR2G SP1 JUND FOS ZFX PPIL3 lnc-AOX1-1 AOX2P AOX3P-AOX2P LINC01792 AOX3P
GH02J200740 Promoter/Enhancer 1.2 Ensembl ENCODE 0.4 -6.8 -6750 2.4 ZNF217 POLR2G NCOR1 TEAD4 KDM6A FOXA1 ZBTB7A TEAD1 TBX3 ZKSCAN8 RNU1-133P FLACC1 LINC01792 lnc-BZW1-3 lnc-AOX1-1 AOX2P AOX3P-AOX2P
GH02J200745 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 0.4 -13.3 -13265 5.1 ZSCAN5C TCF12 POLR2G NCOR1 FOS ZNF639 KDM6A TCF7 FOXA1 TRIM28 RNU1-133P BZW1 BZW1-AS1 AOX1 PPIL3 FLACC1 lnc-BZW1-3 LINC01792 AOX2P AOX3P-AOX2P
GH02J200704 Enhancer 1 Ensembl ENCODE 0.3 +31.9 31893 1.4 EP300 CTCF NCOR1 KDM6A TCF7 REST ZBTB25 RAD21 SKI TRIM22 AOX1 BZW1 BZW1-AS1 AOX2P AOX3P-AOX2P lnc-AOX1-1 AOX3P LINC01792
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01792 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01792 Gene

Genomic Locations for LINC01792 Gene
chr2:200,711,535-200,735,187
(GRCh38/hg38)
Size:
23,653 bases
Orientation:
Minus strand
chr2:201,577,028-201,599,900
(GRCh37/hg19)
Size:
22,873 bases
Orientation:
Minus strand

Genomic View for LINC01792 Gene

Genes around LINC01792 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01792 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01792 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01792 Gene

Proteins for LINC01792 Gene

Post-translational modifications for LINC01792 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01792 Gene

Domains & Families for LINC01792 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01792 Gene

Function for LINC01792 Gene

Phenotypes From GWAS Catalog for LINC01792 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01792 Gene

Localization for LINC01792 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01792 Gene

Pathways & Interactions for LINC01792 Gene

PathCards logo

SuperPathways for LINC01792 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01792 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01792 Gene

Drugs & Compounds for LINC01792 Gene

No Compound Related Data Available

Transcripts for LINC01792 Gene

mRNA/cDNA for LINC01792 Gene

9 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
3 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01792 Gene

No ASD Table

Relevant External Links for LINC01792 Gene

GeneLoc Exon Structure for
LINC01792

Expression for LINC01792 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01792

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01792 Gene

Orthologs for LINC01792 Gene

Evolution for LINC01792 Gene

ENSEMBL:
Gene Tree for LINC01792 (if available)
TreeFam:
Gene Tree for LINC01792 (if available)

No data available for Orthologs for LINC01792 Gene

Paralogs for LINC01792 Gene

No data available for Paralogs for LINC01792 Gene

Variants for LINC01792 Gene

Additional dbSNP identifiers (rs#s) for LINC01792 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01792 Gene

Variant ID Type Subtype PubMed ID
esv3306959 CNV mobile element insertion 20981092
esv3373725 CNV insertion 20981092
esv3584270 CNV loss 25503493

Additional Variant Information for LINC01792 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01792

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01792 Gene

Disorders for LINC01792 Gene

Additional Disease Information for LINC01792

No disorders were found for LINC01792 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01792 Gene

Publications for LINC01792 Gene

  1. Genome-wide association study of intelligence: additive effects of novel brain expressed genes. (PMID: 22449649) Loo SK … Nelson SF (Journal of the American Academy of Child and Adolescent Psychiatry 2012) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01792 Gene

Sources for LINC01792 Gene