Aliases for LINC01791 Gene

Subcategory (RNA class) for LINC01791 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01791 Gene

  • Long Intergenic Non-Protein Coding RNA 1791 2 3 5
  • LINC01791 2 168
  • HSALNG0125316 167
  • NONHSAG025435 92
  • Lnc-ZNF536-2 168

External Ids for LINC01791 Gene

Previous GeneCards Identifiers for LINC01791 Gene

  • GC19U902300

Summaries for LINC01791 Gene

GeneCards Summary for LINC01791 Gene

LINC01791 (Long Intergenic Non-Protein Coding RNA 1791) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01791 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01791 Gene

Genomics for LINC01791 Gene

GeneHancer (GH) Regulatory Elements for LINC01791 Gene

Promoters and enhancers for LINC01791 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J031168 Enhancer 0.5 UCNEbase 500.7 +0.9 908 0.2 RFX5 GATA2 LINC01791 lnc-TSHZ3-4 TSHZ3
GH19J031165 Enhancer 0.4 UCNEbase 500.7 -1.4 -1448 0.2 EP300 LINC01791 piR-33614-137 TSHZ3
GH19J031213 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +47.1 47067 2.3 TCF12 NRF1 JUND FOS REST RUNX1 TAF9B FOSL1 GABPA ZNF184 lnc-TSHZ3-4 LINC01791 TSHZ3
GH19J031160 Enhancer 0.6 Ensembl ENCODE 0.4 -6.8 -6848 1 ZIC2 CTCF RAD21 ZNF121 ZSCAN4 piR-33614-137 LINC01791 TSHZ3
GH19J031220 Enhancer 0.8 Ensembl ENCODE 0.2 +53.2 53201 0.5 USF1 SIX5 USF2 TOE1 HCFC1 GABPA SPI1 ETS1 ELF1 ZFP91 lnc-TSHZ3-4 LINC01791 TSHZ3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01791 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01791 Gene

Genomic Locations for LINC01791 Gene
chr19:31,167,457-31,228,152
(GRCh38/hg38)
Size:
60,696 bases
Orientation:
Plus strand
chr19:31,658,422-31,698,569
(GRCh37/hg19)
Size:
40,148 bases
Orientation:
Plus strand

Genomic View for LINC01791 Gene

Genes around LINC01791 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01791 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01791 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01791 Gene

Proteins for LINC01791 Gene

Post-translational modifications for LINC01791 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01791 Gene

Domains & Families for LINC01791 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01791 Gene

Function for LINC01791 Gene

Phenotypes From GWAS Catalog for LINC01791 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01791 Gene

Localization for LINC01791 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01791 Gene

Pathways & Interactions for LINC01791 Gene

PathCards logo

SuperPathways for LINC01791 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01791 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01791 Gene

Drugs & Compounds for LINC01791 Gene

No Compound Related Data Available

Transcripts for LINC01791 Gene

mRNA/cDNA for LINC01791 Gene

23 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
16 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
6 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01791 Gene

No ASD Table

Relevant External Links for LINC01791 Gene

GeneLoc Exon Structure for
LINC01791

Expression for LINC01791 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01791 Gene

Orthologs for LINC01791 Gene

Evolution for LINC01791 Gene

ENSEMBL:
Gene Tree for LINC01791 (if available)
TreeFam:
Gene Tree for LINC01791 (if available)

No data available for Orthologs for LINC01791 Gene

Paralogs for LINC01791 Gene

No data available for Paralogs for LINC01791 Gene

Variants for LINC01791 Gene

Additional dbSNP identifiers (rs#s) for LINC01791 Gene

Additional Variant Information for LINC01791 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01791

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01791 Gene

Disorders for LINC01791 Gene

Additional Disease Information for LINC01791

No disorders were found for LINC01791 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01791 Gene

Publications for LINC01791 Gene

No publications were found for LINC01791 Gene.

No data available for Mastermind for LINC01791 Gene

Products for LINC01791 Gene

Sources for LINC01791 Gene