Aliases for LINC01791 Gene

Subcategory (RNA class) for LINC01791 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01791 Gene

  • Long Intergenic Non-Protein Coding RNA 1791 2 3 5
  • LINC01791 2 5 165
  • NONHSAG025435.2 91
  • HSALNG0125316 164
  • Lnc-ZNF536-2 165

External Ids for LINC01791 Gene

Previous GeneCards Identifiers for LINC01791 Gene

  • GC19U902300

Summaries for LINC01791 Gene

GeneCards Summary for LINC01791 Gene

LINC01791 (Long Intergenic Non-Protein Coding RNA 1791) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01791 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01791 Gene

Genomics for LINC01791 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01791 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J031168 Enhancer 0.5 UCNEbase 600.7 +0.9 908 0.2 RFX5 GATA2 LINC01791 lnc-TSHZ3-4 TSHZ3 ZNF536
GH19J031167 Promoter 0.3 EPDnew 600.7 +0.0 37 0.1 LINC01791 lnc-TSHZ3-4 TSHZ3 ZNF536
GH19J031165 Enhancer 0.3 UCNEbase 600.7 -1.4 -1448 0.2 LINC01791 piR-33614-137 TSHZ3 ZNF536
GH19J031213 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +47.1 47067 2.3 CREB1 ZNF629 ZNF692 JUND NRF1 SP1 HMBOX1 CEBPB TAF9B FOS lnc-TSHZ3-4 LINC01791 TSHZ3 ZNF536
GH19J031160 Enhancer 0.6 Ensembl ENCODE 0.4 -6.8 -6848 1 ZIC2 ZSCAN4 ZNF121 piR-33614-137 LINC01791 TSHZ3 ZNF536
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01791 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01791 Gene

Genomic Locations for LINC01791 Gene
chr19:31,167,457-31,228,152
(GRCh38/hg38)
Size:
60,696 bases
Orientation:
Plus strand
chr19:31,658,422-31,698,569
(GRCh37/hg19)
Size:
40,148 bases
Orientation:
Plus strand

Genomic View for LINC01791 Gene

Genes around LINC01791 on UCSC Golden Path with GeneCards custom track
LINC01791 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01791 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01791 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01791 Gene

Proteins for LINC01791 Gene

Post-translational modifications for LINC01791 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01791 Gene

Domains & Families for LINC01791 Gene

Gene Families for LINC01791 Gene

genes like me logo Genes that share domains with LINC01791: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01791 Gene

Function for LINC01791 Gene

Phenotypes From GWAS Catalog for LINC01791 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01791 Gene

Localization for LINC01791 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01791 Gene

Pathways & Interactions for LINC01791 Gene

PathCards logo

SuperPathways for LINC01791 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01791 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01791 Gene

Drugs & Compounds for LINC01791 Gene

No Compound Related Data Available

Transcripts for LINC01791 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01791 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000050C5CC_9606 lncRNA 677 4

Ensembl: ENST00000589511 (view in UCSC) ,

LncBook: HSALNT0258313,

LNCipedia: LINC01791:4,

NONCODE: NONHSAT064133.2,

URS0000BC45D7_9606 lncRNA 683 2

HGNC: 52581,

RefSeq: NR_147209,

URS0000EEB16F_9606 lncRNA 1648 1

Ensembl: ENST00000660210 (view in UCSC) ,

URS0000EF6611_9606 lncRNA 1201 1

Ensembl: ENST00000655296 (view in UCSC) ,

URS0000EEBAE5_9606 lncRNA 978 1

Ensembl: ENST00000659241 (view in UCSC) ,

LINC01791 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01791 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01791 Gene

No ASD Table

Relevant External Links for LINC01791 Gene

GeneLoc Exon Structure for
LINC01791

Expression for LINC01791 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01791 Gene

Orthologs for LINC01791 Gene

Evolution for LINC01791 Gene

ENSEMBL:
Gene Tree for LINC01791 (if available)
TreeFam:
Gene Tree for LINC01791 (if available)

No data available for Orthologs for LINC01791 Gene

Paralogs for LINC01791 Gene

No data available for Paralogs for LINC01791 Gene

Variants for LINC01791 Gene

Additional dbSNP identifiers (rs#s) for LINC01791 Gene

Additional Variant Information for LINC01791 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01791

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01791 Gene

Disorders for LINC01791 Gene

No disorders were found for LINC01791 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01791 Gene

Publications for LINC01791 Gene

No publications were found for LINC01791 Gene.

No data available for Mastermind for LINC01791 Gene

Products for LINC01791 Gene

Sources for LINC01791 Gene